Isocitrate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-125   ILE-126  2.7 2.6 3.0 2.9 143.3 143.1 -12.4
 ILE-126   CYS-127  2.2 2.2 -3.5 -4.4 30.4 39.1 56.0
 CYS-127   LEU-128  2.8 2.8 -5.4 4.7 53.7 49.8 -14.8
 LEU-128   ARG-129  2.3 2.2 -5.5 4.6 17.2 19.7 -4.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-322   ALA-323  4.1 3.9 -18.1 -0.8 40.1 36.9 74.6
 ALA-323   PRO-324  3.0 2.9 -4.1 5.6 42.8 41.0 18.7
 PRO-324   GLY-325  2.4 2.5 -5.2 9.8 29.4 26.7 -6.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees