Translation Initiation Factor If2/eif5b

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-445   ARG-446  16.3 16.5 11.2 -1.0 68.7 70.1 68.2
 ARG-446   GLY-447  14.6 15.4 -4.4 -3.7 171.9 175.7 -71.5
 GLY-447   ILE-448  16.4 16.7 -0.5 3.3 124.4 117.8 4.9
 ILE-448   GLU-449  15.7 15.7 14.4 -12.4 83.0 89.2 6.9
 GLU-449   GLU-450  12.0 12.1 -0.5 -4.0 130.6 134.7 -22.4
 GLU-450   GLU-451  12.0 12.3 -6.3 4.5 160.4 154.2 -16.0
 GLU-451   LYS-452  13.5 13.7 21.9 -13.8 70.5 76.9 18.2
 LYS-452   LYS-453  11.2 10.9 -13.8 7.2 100.9 110.3 -38.6
 LYS-453   LYS-454  8.1 7.8 -18.4 13.7 146.8 154.3 -41.6
 LYS-454   LYS-455  9.8 9.5 19.3 -4.2 36.7 43.4 83.0
 LYS-455   TRP-456  9.6 9.6 -30.5 -9.0 88.8 103.5 -57.7
 TRP-456   MET-457  6.2 6.2 23.3 -2.7 56.5 72.9 65.1
 MET-457   GLU-458  5.2 5.1 8.8 -11.7 9.6 6.4 -16.3
 GLU-458   ALA-459  6.6 6.5 -0.8 13.7 116.2 118.7 35.1
 ALA-459   ILE-460  4.2 3.9 -12.4 14.9 79.5 83.1 1.8
 ILE-460   ILE-461  1.0 1.3 10.4 -7.9 53.1 48.2 19.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees