3-Deoxy-D-Manno-2-Octulosonic Acid Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-163   ILE-164  6.5 6.4 -0.9 4.1 54.2 58.9 -52.8
 ILE-164   CYS-165  8.1 8.1 8.4 -17.4 136.8 133.1 255.9
 CYS-165   GLN-166  7.2 7.2 1.8 2.0 87.7 92.4 -214.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASN-273   LEU-274  4.1 4.1 -0.2 -2.9 133.8 134.1 -38.2
 LEU-274   LEU-275  4.8 4.9 15.7 -11.1 72.2 74.1 29.7
 LEU-275   GLU-276  2.9 2.8 -8.0 15.5 143.6 146.5 210.1
 GLU-276   PRO-277  0.7 0.5 0.7 -10.0 155.5 152.9 158.0
 GLU-276   PRO-277  0.7 0.5 0.7 -10.0 155.5 152.9 158.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-276   PRO-277  0.7 0.5 0.7 -10.0 155.5 152.9 158.0
 GLU-276   PRO-277  0.7 0.5 0.7 -10.0 155.5 152.9 158.0
 PRO-277   THR-278  1.8 1.9 5.0 -2.8 89.5 90.7 8.0
 THR-278   CYS-279  5.3 5.3 0.2 0.7 90.3 88.8 -50.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-326   LYS-327  13.2 13.4 -3.5 0.3 29.4 31.4 -103.7
 LYS-327   GLU-328  13.6 13.6 24.4 -31.0 107.4 100.5 275.7
 GLU-328   ILE-329  14.0 14.5 -46.4 37.0 21.5 19.4 247.1
 ILE-329   LYS-330  11.8 12.0 -2.6 19.0 66.4 67.3 -290.0
 LYS-330   VAL-331  13.2 13.3 -15.9 7.9 32.0 45.1 232.4
 VAL-331   GLU-332  10.4 10.2 -2.5 -7.0 82.3 87.7 127.9
 GLU-332   GLU-333  10.8 10.6 9.3 -18.2 111.3 110.0 174.0
 GLU-333   LYS-334  14.4 14.3 5.0 1.2 172.8 170.1 -195.3
 LYS-334   SER-335  13.6 13.6 5.9 -4.4 121.3 119.6 -48.4
 SER-335   ARG-336  11.5 11.4 -2.7 1.2 81.8 80.9 -14.6
 ARG-336   GLU-337  14.8 14.6 3.1 -8.5 137.7 135.0 132.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees