Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-122   PHE-123  3.0 3.2 4.5 2.1 102.9 103.4 -97.8
 PHE-123   HIS-124  4.6 4.5 -18.9 18.6 64.5 59.8 15.1
 HIS-124   VAL-125  3.1 2.8 -6.6 7.7 39.4 39.8 0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-142   PRO-143  9.6 9.0 -8.8 -2.2 54.2 55.9 174.7
 PRO-143   ALA-144  11.9 11.2 -2.7 3.0 36.7 38.5 9.2
 ALA-144   LYS-145  13.7 13.3 2.1 -0.6 135.6 139.1 -30.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-161   ASN-162  14.3 14.1 -2.2 -0.4 47.5 46.6 31.6
 ASN-162   ASP-163  14.3 14.2 -4.3 4.9 104.2 103.5 -22.6
 ASP-163   ALA-164  15.2 15.2 15.0 -31.3 129.3 132.7 217.9
 ALA-164   PHE-165  14.0 14.2 -6.4 9.4 47.4 37.0 -41.7
 PHE-165   GLY-166  17.5 17.4 7.2 -0.1 141.1 146.3 -86.1
 GLY-166   THR-167  16.6 16.4 0.0 2.1 134.9 129.9 -11.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-175   VAL-176  11.3 11.5 -13.8 15.4 103.2 97.4 40.8
 VAL-176   GLY-177  13.3 13.4 -10.6 4.8 91.7 82.8 8.3
 GLY-177   VAL-178  12.0 12.0 18.0 -23.2 148.8 154.7 103.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-186   PHE-187  18.0 17.6 5.4 4.1 81.8 83.3 93.2
 PHE-187   LEU-188  20.5 20.2 8.7 -11.8 130.6 133.8 71.2
 LEU-188   MET-189  20.1 19.9 -3.3 3.0 32.0 38.5 -7.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-406   LEU-407  22.7 22.8 3.9 -5.7 105.4 103.2 -9.7
 LEU-407   PRO-408  19.7 19.8 7.5 2.8 103.1 106.8 -57.3
 PRO-408   GLY-409  17.4 17.3 -11.9 -14.1 15.3 12.3 447.4
 GLY-409   VAL-410  16.3 16.3 -3.0 28.2 51.0 56.4 -268.0
 VAL-410   ASP-411  19.7 19.8 -12.8 3.0 108.5 97.2 -29.0
 ASP-411   ALA-412  21.1 21.1 -7.7 10.5 74.1 60.7 26.6
 ALA-412   LEU-413  18.6 18.8 -17.1 5.1 16.2 15.8 196.3
 LEU-413   SER-414  19.9 20.0 -0.7 -6.3 83.3 80.6 0.7
 SER-414   ASN-415  22.2 22.7 8.9 -3.6 90.8 92.8 -16.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees