Xylulose Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-250   LEU-251  15.1 15.2 4.0 -2.9 105.5 107.3 65.7
 LEU-251   SER-252  12.2 12.4 -7.1 -3.3 22.2 22.7 93.1
 SER-252   LEU-253  13.2 13.7 -6.8 8.9 54.4 55.7 60.6
 LEU-253   GLY-254  10.8 11.3 34.8 -13.1 139.6 140.4 -134.6
 GLY-254   THR-255  13.2 14.1 -6.6 2.7 87.3 103.8 -16.6
 GLY-254   THR-255  13.2 14.1 -6.6 2.7 87.3 103.8 -16.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-254   THR-255  13.2 14.1 -6.6 2.7 87.3 103.8 -16.6
 GLY-254   THR-255  13.2 14.1 -6.6 2.7 87.3 103.8 -16.6
 THR-255   SER-256  14.2 15.3 -6.6 9.3 27.6 33.7 136.7
 SER-256   GLY-257  15.2 15.9 39.5 -21.4 137.9 129.4 -105.1
 GLY-257   VAL-258  12.3 12.9 0.1 7.4 162.0 165.2 -27.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-289   VAL-290  12.4 12.7 1.0 0.4 169.2 173.1 -7.3
 VAL-290   MET-291  13.0 13.4 -4.8 4.1 73.5 71.4 9.5
 MET-291   LEU-292  9.9 10.4 3.6 -18.2 149.6 158.5 104.4
 LEU-292   SER-293  8.5 9.4 28.0 -4.5 126.8 121.9 -116.4
 SER-293   ALA-294  10.1 10.7 -22.5 10.7 133.7 124.1 -70.2
 SER-293   ALA-294  10.1 10.7 -22.5 10.7 133.7 124.1 -70.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-293   ALA-294  10.1 10.7 -22.5 10.7 133.7 124.1 -70.2
 SER-293   ALA-294  10.1 10.7 -22.5 10.7 133.7 124.1 -70.2
 ALA-294   ALA-295  7.4 7.6 15.3 0.1 16.2 18.0 91.8
 ALA-295   SER-296  9.5 9.8 -12.5 -15.5 112.5 121.4 -126.8
 SER-296   CYS-297  10.7 10.7 49.9 -31.0 79.3 89.5 86.3
 CYS-297   LEU-298  7.7 7.3 -14.4 15.3 139.8 136.6 23.3
 LEU-298   ASP-299  5.4 5.2 -2.8 -6.2 152.0 157.7 -62.9
 ASP-299   TRP-300  8.2 7.6 18.6 -16.1 78.0 74.3 -11.8
 TRP-300   ALA-301  9.0 7.7 -6.2 14.6 105.4 102.8 76.5
 ALA-301   ALA-302  6.0 4.5 5.7 -11.6 19.5 23.1 -64.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-366   GLU-367  1.7 1.3 -2.2 -3.3 19.9 20.6 27.0
 GLU-367   GLY-368  3.9 3.7 -2.1 6.5 50.1 49.6 -24.0
 GLY-368   VAL-369  3.5 3.7 -7.3 0.6 74.1 72.6 28.1
 VAL-369   GLY-370  1.8 2.3 -0.6 11.8 46.0 49.4 -56.4
 GLY-370   TYR-371  1.7 1.3 -10.0 -4.9 29.9 23.7 94.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-391   LEU-392  16.1 16.2 -4.4 -13.5 56.1 51.6 142.5
 LEU-392   ILE-393  14.2 14.2 -5.7 -12.1 47.8 36.8 71.2
 ILE-393   GLY-394  15.6 15.6 13.7 10.5 123.7 116.9 -142.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-396   ALA-397  9.8 10.0 -25.4 2.3 66.2 76.1 48.6
 ALA-397   ARG-398  11.9 11.4 6.7 0.3 44.4 45.6 38.2
 ARG-398   SER-399  12.9 12.4 -13.0 15.4 106.0 103.8 3.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-465   GLN-466  10.6 10.2 2.0 -1.7 35.7 35.5 20.4
 GLN-466   PRO-467  10.1 10.0 2.1 -0.6 88.3 86.9 19.5
 PRO-467   ARG-468  12.2 12.0 7.9 -7.5 133.8 130.9 -5.5
 ARG-468   ARG-469  10.6 10.1 -5.2 8.7 110.3 112.5 -1.4
 ARG-469   GLU-470  7.5 6.9 -7.0 1.0 131.1 129.7 -51.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-471   PHE-472  11.6 11.3 0.0 2.7 111.8 110.8 24.1
 PHE-472   ARG-473  8.7 8.6 -3.8 3.3 132.3 134.9 -25.8
 ARG-473   ARG-474  8.4 8.2 5.5 -3.1 81.0 76.2 9.6
 ARG-474   LEU-475  12.2 11.9 -6.3 8.1 43.6 48.1 13.3
 LEU-475   TYR-476  13.0 12.9 0.0 -5.4 86.6 90.6 20.0
 TYR-476   GLN-477  11.0 10.9 -5.9 14.8 131.8 134.1 -20.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees