Glutamate Receptor 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-107   SER-108  7.2 7.3 0.2 9.5 124.6 121.7 -15.8
 SER-108   LEU-109  4.1 4.0 22.7 -13.4 52.4 51.1 33.3
 LEU-109   GLY-110  0.6 0.5 -10.5 -15.3 58.5 55.1 67.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.8 8.8 2.7 -0.7 30.7 34.3 14.4
 ASP-216   SER-217  5.9 5.8 5.6 -2.4 103.0 103.2 -2.0
 SER-217   LYS-218  2.4 2.1 8.0 16.6 66.3 77.2 55.3
 LYS-218   GLY-219  1.8 2.3 -17.4 -4.0 54.6 67.4 39.9
 GLY-219   TYR-220  4.7 4.8 -17.8 2.9 81.0 78.8 2.1
 TYR-220   GLY-221  8.2 8.1 -13.5 8.5 118.3 117.0 -9.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees