Ribulose Bisphosphate Carboxylase Small Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-29   VAL-30  5.5 5.5 0.5 -6.4 78.3 81.5 70.3
 VAL-30   ASP-31  7.6 7.4 13.3 -15.5 35.0 32.6 3.9
 ASP-31   TYR-32  5.9 5.9 16.4 0.2 103.4 99.0 1.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-114   PHE-115  4.9 5.3 -14.4 10.9 98.8 93.0 34.5
 PHE-115   ILE-116  6.1 6.1 -11.2 9.7 101.3 97.8 -16.6
 ILE-116   ALA-117  9.6 9.4 -0.5 1.2 39.4 35.7 29.3
 ALA-117   TYR-118  12.2 12.1 -3.6 -7.2 104.6 104.9 21.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees