Adenylate Kinase 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-39   LEU-40  5.5 5.5 1.8 1.5 64.0 65.2 35.2
 LEU-40   SER-41  2.8 2.8 -9.6 9.2 53.7 51.5 34.0
 SER-41   THR-42  3.0 2.8 -2.3 5.4 123.7 124.6 26.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-79   LYS-80  4.9 4.7 4.6 -3.1 137.8 134.6 32.9
 LYS-80   GLU-81  5.7 5.6 2.1 -5.3 110.1 113.3 17.5
 GLU-81   ALA-82  2.1 2.1 -0.8 8.2 126.2 124.9 4.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees