Phosphoribosylglycinamide Formyl Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-135   THR-136  8.8 8.5 -2.9 -0.4 67.5 68.8 5.2
 THR-136   SER-137  5.7 5.4 -11.9 9.3 64.2 65.4 25.0
 SER-137   ARG-138  2.4 2.2 9.7 -1.1 43.9 41.9 40.2
 ARG-138   TYR-139  2.7 1.9 7.7 3.6 84.1 82.1 13.9
 TYR-139   MET-140  3.0 3.0 5.0 8.4 29.7 38.1 63.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-203   HIS-204  3.3 3.1 -25.3 32.0 139.6 136.4 30.4
 HIS-204   ILE-205  1.9 2.1 -24.7 40.2 102.8 101.6 9.8
 ILE-205   ASP-206  1.9 1.7 8.3 -0.1 25.4 14.5 29.1
 ASP-206   PHE-207  2.6 2.6 24.3 -45.4 83.6 89.6 -15.2
 PHE-207   ASP-208  6.1 6.1 -1.4 8.6 153.3 151.4 27.3
 ASP-208   VAL-209  8.7 8.7 -0.5 -4.0 87.1 85.6 -1.8
 VAL-209   GLU-210  11.0 10.9 8.3 -9.3 161.5 166.2 0.6
 GLU-210   VAL-211  11.9 11.9 9.5 0.4 99.4 95.5 -15.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees