D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-30   ASN-31  10.2 10.1 -8.1 -5.2 74.8 73.9 111.8
 ASN-31   ASP-32  13.4 13.2 10.9 24.3 80.5 71.5 130.5
 ASP-32   LEU-33  14.1 14.3 74.5 -49.8 142.2 115.2 -271.7
 LEU-33   THR-34  16.9 17.2 41.3 -71.9 123.1 146.9 262.9
 THR-34   ASP-36  15.3 15.9 48.5 -34.8 145.5 130.4 -105.8
 ASP-36   ALA-37  14.1 13.6 29.8 -6.5 84.0 81.2 13.5
 ALA-37   ASN-38  10.3 9.9 1.0 -10.5 106.9 104.8 48.4
 ASN-38   THR-39  10.5 9.9 7.5 -8.1 37.2 39.4 -16.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-53   ASP-54  7.5 7.8 -15.8 2.7 124.2 124.3 -95.6
 ASP-54   ALA-55  8.9 9.1 20.8 -5.6 60.0 69.2 56.5
 ALA-55   GLU-56  6.5 6.7 15.8 -5.1 40.0 32.1 79.5
 GLU-56   VAL-57  5.2 5.0 -17.3 2.5 81.8 83.2 20.6
 VAL-57   SER-58  2.6 2.5 -15.1 10.1 147.7 149.5 -43.3
 SER-58   VAL-59  2.5 2.2 9.9 -10.6 98.5 95.3 -146.4
 VAL-59   ASN-60  5.2 4.8 -0.6 1.1 144.6 143.8 68.8
 ASN-60   GLY-61  6.5 6.2 3.6 16.0 96.5 98.4 -76.1
 GLY-61   ASN-62  10.2 9.8 -26.2 4.7 27.5 42.8 204.1
 ASN-62   ASN-63  11.4 11.3 13.2 -5.8 130.3 142.9 -36.6
 ASN-63   LEU-64  8.7 8.9 -3.3 -1.8 90.2 89.8 -68.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-149   THR-150  6.4 6.5 12.1 -0.2 26.3 29.4 135.2
 THR-150   THR-151  7.9 8.2 4.3 -5.4 47.8 46.2 -52.1
 THR-151   ASN-152  5.5 5.9 4.6 -3.4 102.8 101.0 -24.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-315   GLY-316  5.9 5.9 -2.6 -8.5 43.2 46.7 110.1
 GLY-316   TYR-317  4.8 4.7 9.5 -1.2 91.6 93.7 -47.8
 TYR-317   SER-318  2.6 2.8 3.3 -6.1 39.3 40.1 9.8
 SER-318   HIS-319  1.4 1.7 0.6 1.3 91.7 90.2 -59.3
 HIS-319   ARG-320  2.7 2.2 -0.2 -10.1 51.5 47.0 38.1
 ARG-320   VAL-321  2.3 2.2 15.0 -3.1 71.5 68.9 59.1
 VAL-321   VAL-322  4.1 4.0 4.4 -2.1 59.9 60.9 -3.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees