Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-244   ASP-245  8.8 9.1 -8.3 0.2 30.3 35.6 218.9
 ASP-245   GLN-246  8.5 8.3 -12.0 5.9 88.2 83.0 42.9
 GLN-246   GLN-247  5.0 4.9 28.3 -27.0 100.6 100.0 -49.5
 GLN-247   ALA-248  4.5 4.4 4.5 -19.1 156.9 151.3 171.8
 ALA-248   ALA-249  6.7 6.6 31.8 -16.2 140.3 138.5 -119.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-253   LEU-254  2.5 2.8 -14.3 25.4 89.7 87.5 142.8
 LEU-254   CYS-255  6.1 6.5 -13.3 5.8 123.1 130.2 -0.7
 CYS-255   VAL-256  6.2 6.4 -20.3 32.4 127.5 134.2 133.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-285   LEU-286  9.9 10.4 8.0 -1.3 44.4 48.8 -13.8
 LEU-286   LEU-287  7.0 7.4 -17.0 -1.5 64.1 63.3 91.4
 LEU-287   THR-288  3.3 3.5 -4.2 11.3 108.7 113.1 58.7
 THR-288   THR-289  3.0 3.1 16.3 -7.1 76.6 80.7 -18.7
 THR-289   ILE-290  2.9 2.7 7.0 -15.9 52.8 56.1 -98.5
 ILE-290   ALA-291  6.1 5.9 -10.2 15.6 165.4 165.0 47.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-292   GLY-293  9.3 9.2 -4.1 18.7 68.5 66.9 17.4
 GLY-293   PRO-294  11.7 11.8 12.8 -27.1 149.3 164.4 129.8
 PRO-294   THR-295  13.1 13.0 3.5 -2.5 94.2 100.9 71.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-299   TYR-300  10.1 10.0 4.8 -2.4 124.4 126.2 52.3
 TYR-300   ALA-301  7.7 7.5 -4.9 7.3 120.6 123.5 1.7
 ALA-301   LEU-302  4.9 4.9 7.4 -4.3 124.3 128.3 -196.0
 LEU-302   GLU-303  5.0 4.9 22.3 -19.4 64.8 55.6 106.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-431   ARG-432  8.8 8.8 14.3 -8.2 91.9 92.6 115.1
 ARG-432   PRO-433  7.0 7.0 23.4 -32.8 53.8 50.1 7.2
 PRO-433   GLU-434  3.3 3.6 31.8 -33.4 37.0 51.5 37.8
 GLU-434   VAL-435  2.3 4.0 21.5 -23.4 106.4 116.9 91.0
 VAL-435   ARG-436  3.7 4.9 -45.3 23.8 34.2 20.1 307.0
 ARG-436   GLU-437  6.0 6.2 31.2 -17.9 133.8 132.8 -233.3
 GLU-437   VAL-438  7.9 7.9 -24.7 16.9 57.5 62.0 11.3
 VAL-438   THR-439  4.9 5.2 5.8 -4.5 142.8 145.7 15.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-458   GLU-459  14.0 14.4 -29.8 43.1 33.2 33.7 -170.0
 GLU-459   LEU-460  13.6 14.4 -8.6 8.6 77.4 77.8 120.7
 LEU-460   GLN-461  10.3 10.7 -11.6 22.1 94.4 84.9 109.8
 GLN-461   GLU-462  9.4 10.2 -27.2 -20.2 35.1 41.5 466.2
 GLU-462   LYS-463  8.0 8.6 31.0 -4.3 90.6 108.4 -127.5
 LYS-463   ALA-464  5.2 6.4 -16.3 5.2 111.6 101.1 20.2
 ALA-464   VAL-465  4.2 3.4 38.6 -12.4 134.5 117.2 -312.3
 VAL-465   ILE-466  3.8 2.8 26.7 -1.5 76.8 81.5 20.7
 ILE-466   GLU-467  5.1 5.0 -23.9 19.4 32.0 35.8 -46.8
 GLU-467   ARG-468  5.6 5.6 13.9 -32.1 90.5 89.8 -72.4
 ARG-468   GLU-469  9.2 9.1 15.0 -8.3 46.1 36.8 100.1
 GLU-469   PHE-470  11.8 11.7 6.0 -7.9 84.2 89.4 -26.2
 PHE-470   ARG-471  14.6 14.7 26.9 -29.6 61.3 59.8 -23.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees