Charged Multivesicular Body Protein 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-18   TRP-19  3.7 4.0 12.2 -15.5 140.7 136.4 89.4
 TRP-19   SER-20  1.6 2.1 19.4 -23.4 127.8 125.9 -39.1
 SER-20   LEU-21  4.0 4.5 13.6 -7.0 67.7 68.5 7.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-80   LYS-81  8.7 8.6 3.8 -0.6 106.3 104.3 -52.3
 LYS-81   ALA-82  8.3 8.3 -0.5 -5.0 118.6 117.3 -14.7
 ALA-82   HIS-83  5.7 5.7 12.9 -15.5 116.8 112.9 83.9
 ASN-85   SER-86  4.3 4.6 -5.3 -8.6 108.8 106.5 51.6
 SER-86   VAL-87  1.8 2.0 16.0 -10.4 147.1 143.5 27.9
 VAL-87   LEU-88  1.4 1.6 5.0 -1.5 123.5 119.4 -51.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees