Putative Tetr Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-58   LYS-59  17.6 17.5 -3.9 2.9 33.4 33.4 15.4
 LYS-59   THR-60  20.1 20.0 -8.9 1.9 37.0 31.8 51.5
 THR-60   LEU-61  18.7 18.9 1.6 0.4 102.1 101.2 -9.8
 LEU-61   ASP-62  15.1 15.2 -8.4 -5.8 65.1 68.2 68.2
 ASP-62   ARG-63  16.7 16.2 13.4 1.4 169.4 163.0 -128.5
 ARG-63   TYR-64  17.6 17.7 0.0 0.1 118.5 127.1 25.2
 CYS-66   GLU-67  9.6 9.8 18.7 2.1 41.7 56.0 44.3
 GLU-67   ARG-68  8.3 8.9 96.1 -67.0 37.6 59.3 191.4
 ARG-68   THR-69  11.5 12.2 -36.1 -5.6 120.2 125.0 -128.4
 THR-69   LEU-70  11.5 11.4 10.3 0.6 90.3 73.6 -14.2
 LEU-70   GLN-71  15.3 15.0 -1.0 -4.0 33.1 46.6 50.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-91   ARG-92  17.9 18.4 -5.7 11.0 95.4 92.1 24.2
 ARG-92   VAL-93  14.7 15.1 -2.9 -2.2 147.3 144.6 -38.3
 VAL-93   GLU-94  15.8 16.1 3.0 -1.2 96.6 97.8 -64.8
 GLU-94   VAL-95  19.2 19.7 19.6 -18.1 116.8 117.9 27.6
 VAL-95   PHE-96  17.9 18.6 -1.8 12.3 127.9 128.9 31.9
 PHE-96   THR-97  15.8 16.7 0.6 -12.3 44.4 49.4 -29.5
 THR-107   VAL-108  7.0 7.0 20.7 -79.6 20.8 100.9 -226.0
 VAL-108   GLN-109  7.7 7.4 -143.8 -50.3 88.1 43.9 -612.5
 GLN-109   ALA-110  11.2 9.4 81.7 -96.5 116.0 73.0 -51.2
 ALA-110   GLY-111  10.2 12.5 173.6 -53.9 55.5 44.6 1195.3
 GLY-111   LEU-112  8.5 14.9 125.4 27.0 44.3 57.3 -1171.7
 LEU-112   ALA-113  11.6 16.8 160.8 -11.4 109.3 98.9 -204.8
 ALA-113   SER-114  14.6 19.5 -179.1 -125.7 79.1 16.4 -356.0
 PRO-117   HIS-118  15.2 15.8 -6.1 -8.0 32.1 24.1 76.9
 HIS-118   HIS-119  16.3 16.5 -2.1 1.9 67.8 72.0 -7.0
 HIS-119   GLU-120  14.2 14.1 5.2 -3.8 119.5 116.5 5.8
 GLU-120   ILE-121  12.8 12.9 -2.8 4.3 130.1 134.0 6.2
 ILE-121   VAL-122  11.9 12.2 -7.1 1.8 113.9 112.4 -9.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-128   ARG-129  4.3 4.5 -8.8 10.8 43.0 44.2 35.6
 ARG-129   GLU-130  2.1 2.1 -6.4 7.8 111.5 114.5 20.8
 GLU-130   GLN-131  2.4 1.9 -8.6 13.7 118.9 115.0 -7.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees