Lactophage P2 Receptor Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-19   SER-20  17.6 15.4 124.9 -29.9 94.1 83.1 1464.4
 SER-20   ASN-21  14.5 15.0 -165.1 -0.8 73.7 79.1 766.2
 ASN-21   ASN-22  12.4 12.4 6.8 0.4 174.2 171.6 -123.5
 ASN-22   ASP-23  13.6 13.5 3.1 -2.1 117.8 119.1 10.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-33   ASP-34  1.6 1.4 2.9 -2.0 122.0 123.5 -52.0
 ASP-34   TYR-35  1.6 1.8 0.9 -0.1 155.7 154.8 23.4
 TYR-35   ARG-36  1.3 1.4 3.4 -7.5 111.6 110.7 36.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-110   ASP-111  4.0 3.9 -0.7 -1.8 51.2 52.4 29.8
 ASP-111   ILE-112  5.6 5.6 0.7 -3.3 59.7 61.3 -42.7
 ILE-112   ASN-113  6.4 6.3 7.1 -7.4 118.8 119.3 132.2
 ASN-113   ASN-114  9.0 8.9 -2.3 5.0 87.6 88.5 0.6
 ASN-114   GLY-115  11.0 10.8 0.8 -8.7 22.4 20.3 -217.9
 GLY-115   SER-116  10.5 10.4 3.4 8.1 43.0 47.6 214.6
 SER-116   GLY-117  9.3 9.2 -1.1 -0.8 98.3 96.7 -38.4
 GLY-117   VAL-118  5.9 5.6 4.8 -6.8 97.4 100.6 -79.1
 VAL-118   LEU-119  2.7 2.6 0.5 0.4 136.6 136.1 -0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-140   GLN-141  12.7 12.7 5.5 -4.3 95.4 91.8 21.2
 GLN-141   THR-142  9.8 9.8 0.5 1.4 137.5 139.9 -3.1
 THR-142   SER-143  7.7 7.7 -2.2 2.8 59.6 60.6 11.7
 SER-143   THR-144  5.4 5.4 -3.7 2.1 71.1 67.8 77.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees