Holliday Junction Atp-Dependent DNA Helicase Ruva
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-125
GLU-126
29.8
29.8
-11.6
18.0
93.0
90.6
1.5
GLU-126
LEU-127
26.4
26.3
-14.6
-31.6
33.0
36.9
509.5
LEU-127
ARG-128
25.5
25.4
99.9
-68.4
121.4
136.9
-407.4
ARG-128
ASP-129
27.3
27.5
21.7
-34.6
92.3
104.3
-85.9
ASP-129
LYS-130
24.9
25.1
0.6
36.3
106.2
91.0
-78.9
LYS-130
VAL-131
22.2
22.0
-45.5
19.6
43.3
30.3
216.0
VAL-131
GLY-132
23.5
22.7
11.7
-15.7
154.4
134.4
97.2
GLY-132
VAL-133
23.8
23.5
-10.0
-178.7
85.3
105.6
138.1
ALA-146
VAL-147
16.9
16.4
-80.3
119.5
116.9
131.8
197.9
VAL-147
ARG-148
14.8
14.8
-48.6
27.1
170.2
167.2
-272.8
ARG-148
SER-149
16.6
16.8
-25.9
3.8
126.3
126.3
-186.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees