Protein Utr4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-30   CYS-31  13.8 14.0 -1.8 0.0 21.4 22.6 -2.2
 CYS-31   PRO-32  14.2 14.6 15.3 3.5 112.3 109.1 -33.1
 PRO-32   ILE-33  17.4 17.7 1.9 8.9 118.1 101.1 5.0
 ILE-33   SER-34  18.8 19.3 -2.2 -33.1 5.3 25.1 397.1
 SER-34   PHE-35  18.9 18.8 18.7 3.1 114.9 110.5 -151.6
 PHE-35   VAL-36  15.1 15.1 1.3 -6.1 125.4 112.5 -8.1
 VAL-36   LYS-37  14.9 14.0 -9.3 15.1 26.7 36.7 -27.4
 LYS-37   GLU-38  17.6 17.0 8.0 -31.9 125.6 146.1 217.2
 GLU-38   THR-39  17.2 17.0 20.8 2.9 109.8 108.3 -195.1
 THR-39   LEU-40  13.4 13.4 0.1 1.0 97.4 95.3 -74.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-98   TYR-99  9.0 9.2 2.9 -1.0 57.5 58.2 -17.4
 TYR-99   VAL-100  8.0 8.3 0.0 4.9 117.3 116.5 34.0
 VAL-100   TRP-101  6.1 6.4 -4.9 -0.2 52.1 52.8 5.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees