Nagk Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-119   GLY-120  8.4 8.1 -67.5 11.7 65.9 63.6 100.0
 GLY-120   VAL-121  5.9 5.2 -8.7 8.2 131.6 126.1 -16.9
 VAL-121   VAL-122  3.8 3.3 -3.4 -18.1 58.9 61.1 45.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-305   LYS-306  5.1 5.2 -18.9 -0.5 85.4 83.1 55.8
 LYS-306   LEU-307  4.2 4.4 -6.4 5.6 113.3 118.9 2.5
 LEU-307   ARG-308  2.9 3.4 -7.3 18.3 152.2 149.7 37.3
 ARG-308   HIS-309  4.2 4.7 2.9 -6.0 85.9 85.6 19.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-333   ASN-334  4.0 4.0 50.8 -15.4 42.0 49.6 61.9
 ASN-334   ALA-335  3.8 4.1 20.4 -0.1 63.3 56.5 38.5
 ALA-335   ILE-336  0.6 0.7 1.0 -19.1 115.4 122.6 42.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees