Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-164   THR-165  6.5 6.4 -20.6 28.4 68.0 59.2 -41.1
 THR-165   LYS-166  5.3 5.5 23.4 -4.8 154.2 157.9 -150.8
 LYS-166   VAL-167  4.4 4.6 -21.0 -0.7 91.8 89.6 15.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-186   LEU-187  6.4 6.7 -11.0 -1.2 60.4 63.4 51.2
 LEU-187   THR-188  5.6 5.7 -10.4 2.2 38.0 35.4 67.7
 THR-188   TYR-189  4.5 4.7 -3.8 3.5 95.0 94.1 34.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees