Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-32   LEU-33  6.3 6.0 2.2 1.1 61.8 63.2 15.7
 LEU-33   ALA-34  3.8 3.6 6.4 11.5 61.8 59.4 22.0
 ALA-34   THR-35  3.4 2.1 23.9 5.4 70.2 58.9 27.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-65   ASP-66  3.9 4.4 -8.2 -10.3 108.2 117.1 -11.9
 ASP-66   ILE-67  6.7 7.5 20.5 -5.4 9.2 27.8 29.0
 ILE-67   MET-68  7.4 8.6 4.6 5.8 59.7 48.0 22.7
 MET-68   VAL-69  3.7 5.2 -9.8 -1.7 86.1 97.9 -6.9
 VAL-69   ASN-70  4.4 6.4 12.3 -14.1 57.4 64.6 -7.8
 ASN-70   MET-71  7.7 9.7 9.4 -11.7 12.4 8.5 -2.4
 MET-71   ILE-72  6.1 8.2 3.5 15.1 74.2 69.1 30.3
 ILE-72   LYS-73  5.1 6.8 -6.0 -0.9 85.7 100.3 -3.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees