F1 Capsule Antigen

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-28   ILE-29  8.1 7.5 1.1 6.6 79.1 82.3 -1.5
 ILE-29   THR-30  4.5 3.7 -5.0 32.6 157.8 156.6 239.7
 THR-30   ILE-31  3.0 2.1 -3.3 -16.4 93.6 89.2 -10.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-37   ASP-38  2.9 3.7 7.1 -13.9 66.4 63.9 -29.1
 ASP-38   THR-39  4.6 5.1 11.5 4.2 13.7 5.0 173.8
 THR-39   GLU-40  6.0 6.2 -6.8 6.4 115.4 109.1 -132.9
 GLU-40   LEU-41  6.2 6.1 -6.8 4.7 78.3 69.6 58.3
 LEU-41   LEU-42  4.4 4.7 4.7 -1.1 35.8 38.0 28.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-57   THR-58  2.8 2.6 -1.7 6.0 86.4 80.8 5.8
 THR-58   SER-59  2.7 2.7 -3.9 11.6 71.5 68.4 16.8
 SER-59   VAL-60  1.8 1.7 -13.6 13.7 136.0 139.3 32.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-86   LYS-87  3.5 3.3 5.9 -6.1 20.6 19.9 -18.9
 LYS-87   VAL-88  3.3 2.9 -2.9 1.5 110.0 111.3 57.1
 VAL-88   ILE-89  1.2 0.9 -5.1 4.1 124.3 125.1 45.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-99   PRO-100  4.5 4.8 -48.4 -3.0 42.4 50.1 276.2
 PRO-100   LYS-101  1.5 1.5 -5.7 -4.7 98.3 103.3 -76.3
 LYS-101   VAL-102  4.3 4.2 6.1 -2.3 38.8 42.5 34.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-105   ASN-106  8.8 8.6 -13.7 23.9 66.1 67.9 -27.8
 ASP-111   VAL-112  7.5 7.4 -34.7 16.9 101.9 104.8 -12.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-121   PHE-122  5.9 6.0 -17.3 17.5 170.7 174.1 6.2
 PHE-122   VAL-123  5.4 5.5 2.9 2.0 74.0 74.7 21.2
 VAL-123   ARG-124  2.4 2.6 -1.1 6.9 149.8 146.4 64.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees