Probable Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-42   ALA-43  1.3 1.3 3.7 -2.1 55.9 58.3 -8.8
 ALA-43   LEU-44  1.7 1.9 7.8 -7.5 41.0 44.7 40.0
 LEU-44   VAL-45  1.1 1.1 0.2 4.1 107.3 112.3 -4.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-75   LEU-76  9.5 9.7 -0.3 -6.2 66.1 66.1 87.2
 LEU-76   ASP-77  5.7 5.9 -4.3 -6.9 16.9 19.5 98.9
 ASP-77   LYS-78  7.0 6.6 21.7 -12.6 126.0 129.5 -103.1
 LYS-78   ARG-79  9.5 9.2 13.6 -16.9 106.7 106.6 10.6
 ARG-79   GLY-80  7.5 7.1 -9.3 8.8 55.6 60.5 19.3
 GLY-80   LEU-81  4.5 3.7 -20.1 25.1 115.0 121.7 -76.2
 LEU-81   ILE-82  1.9 1.7 -5.1 -12.6 106.3 104.8 -57.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-103   ALA-104  6.0 6.3 -2.9 -13.1 87.3 91.9 -10.4
 ALA-104   GLU-105  8.1 8.5 6.6 5.0 44.7 57.0 53.1
 GLU-105   LEU-106  7.5 7.5 1.1 4.4 23.2 16.6 46.4
 LEU-106   GLU-107  7.3 7.3 2.1 -29.4 84.2 82.2 65.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees