DNA Repair Protein Xrcc4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-123   ARG-124  33.3 32.6 0.3 -1.9 75.6 79.5 -2.2
 ARG-124   GLU-125  31.5 30.8 -0.4 3.8 169.3 170.9 14.0
 GLU-125   LEU-126  32.3 31.9 -2.7 2.4 114.3 115.9 2.6
 LEU-126   ILE-127  31.1 30.5 7.7 -5.5 99.4 95.6 -20.2
 LEU-131   ASP-132  22.8 22.6 -18.9 12.1 148.2 154.5 -32.4
 ASP-132   THR-133  23.5 23.4 -13.1 11.1 132.4 128.3 -21.4
 THR-133   ILE-134  22.8 22.8 -10.2 5.0 80.7 82.7 -10.1
 ILE-134   ALA-135  19.6 19.5 -0.3 4.7 110.5 110.4 2.8
 ALA-135   GLU-136  18.7 18.3 5.3 -3.8 7.7 5.1 4.7
 GLU-136   ASN-137  19.5 19.2 -14.0 3.1 108.3 109.0 -20.1
 ASN-137   GLN-138  17.4 17.7 17.8 -8.1 97.5 104.8 17.6
 GLN-138   ALA-139  14.2 14.6 -2.9 -0.5 134.8 136.4 -7.9
 ALA-139   LYS-140  14.6 14.4 -13.2 18.4 146.6 146.6 32.2
 LYS-140   ASN-141  14.4 14.7 -7.2 1.3 86.5 87.6 -3.8
 ASN-141   GLU-142  11.8 12.3 -12.8 12.8 90.3 87.4 -3.5
 GLU-142   HIS-143  9.6 9.8 -2.2 -2.3 159.3 153.7 -29.3
 HIS-143   LEU-144  10.5 10.5 -4.4 16.5 123.0 128.1 41.7
 LEU-144   GLN-145  9.2 9.8 -6.5 -0.3 73.0 81.4 4.5
 GLN-145   LYS-146  6.2 6.5 -1.8 15.0 116.3 114.0 10.9
 LYS-146   GLU-147  5.2 5.5 4.1 0.2 18.4 15.3 26.0
 GLU-147   ASN-148  5.7 6.0 -20.6 9.6 93.4 98.8 -10.4
 ASN-148   GLU-149  4.5 4.8 13.7 -2.6 90.2 99.1 -10.9
 GLU-149   ARG-150  0.8 1.3 -8.5 8.5 145.7 142.3 4.2
 ARG-150   LEU-151  1.8 2.1 -10.6 23.3 134.8 134.8 50.1
 LEU-151   LEU-152  1.7 1.6 -10.6 -5.6 76.4 80.8 -7.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees