Non-Specific Lipid Transfer Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-10   ALA-11  5.0 5.0 -19.5 8.3 49.9 54.3 56.5
 ALA-11   PRO-12  6.2 6.1 -4.0 7.3 99.1 105.0 13.2
 PRO-12   CYS-13  5.2 5.3 -5.5 -1.3 73.6 73.2 37.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-27   CYS-28  1.7 1.9 2.2 -2.0 124.8 123.3 9.7
 CYS-28   ASN-29  1.0 0.8 -5.1 5.4 54.4 58.6 5.4
 ASN-29   GLY-30  2.5 2.6 4.6 -8.4 56.4 55.3 -11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-38   ARG-39  15.7 15.6 15.6 -13.8 54.8 55.0 8.2
 ARG-39   THR-40  18.1 17.8 15.3 -6.1 114.2 110.7 9.4
 THR-40   THR-41  21.6 21.2 -19.0 9.1 30.3 33.1 76.6
 THR-41   PRO-42  22.4 21.8 0.9 3.6 138.3 146.7 -39.7
 PRO-42   ASP-43  22.5 22.4 -13.7 5.4 92.3 85.8 23.2
 ASP-43   ARG-44  19.2 19.4 6.5 -7.5 112.3 103.2 28.4
 ARG-44   GLN-45  17.5 17.1 7.9 -7.6 174.1 162.5 -7.0
 GLN-45   ALA-46  19.0 18.5 7.4 -4.8 116.5 124.3 -19.0
 ALA-46   ALA-47  18.0 17.8 4.2 3.6 89.4 86.6 -13.8
 ALA-47   CYS-48  14.4 14.3 -0.3 1.5 47.2 48.4 -25.2
 CYS-48   ASN-49  14.4 13.9 -0.3 3.5 22.7 21.7 -19.2
 ASN-49   CYS-50  15.3 15.0 -0.4 -4.4 79.9 79.2 6.1
 CYS-50   LEU-51  13.2 13.0 11.9 15.2 105.0 100.2 -95.4
 LEU-51   LYS-52  9.9 9.8 -34.7 7.2 35.0 17.7 239.3
 LYS-52   GLN-53  11.6 10.4 8.8 3.4 140.6 126.9 -107.1
 GLN-53   LEU-54  11.3 11.0 -4.2 -2.7 91.6 95.7 19.1
 LEU-54   SER-55  8.2 8.4 6.2 2.6 108.2 110.4 9.3
 SER-55   ALA-56  6.5 5.5 -33.4 43.4 9.4 10.1 -94.2
 ALA-56   SER-57  7.5 6.5 20.0 -1.9 120.3 103.8 -65.7
 SER-57   VAL-58  7.2 6.9 18.5 -19.8 79.0 83.6 -18.5
 VAL-58   PRO-59  4.6 3.8 8.1 -19.6 114.4 134.5 58.9
 PRO-59   GLY-60  1.7 2.3 -20.8 12.5 125.6 110.3 -35.5
 GLY-60   VAL-61  2.0 2.7 5.5 15.7 29.9 28.6 161.9
 VAL-61   ASN-62  2.7 2.6 41.4 -38.6 95.9 95.8 -20.8
 ASN-62   PRO-63  6.3 6.3 -15.7 10.5 123.6 124.5 -23.7
 PRO-63   ASN-64  8.6 8.2 1.4 -1.7 38.5 40.5 -1.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees