Gene V Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-31   LEU-32  4.6 4.3 1.6 -10.1 132.0 135.1 58.0
 LEU-32   CYS-33  7.2 6.8 -9.3 16.0 25.4 30.6 -108.0
 CYS-33   TYR-34  7.0 6.3 -8.4 9.3 54.3 56.3 78.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-53   PRO-54  8.1 8.1 -26.2 -0.6 78.2 90.2 36.3
 PRO-54   ALA-55  5.7 6.0 -28.9 15.9 123.8 131.7 -66.2
 ALA-55   TYR-56  2.4 2.6 -0.2 -9.6 157.2 155.9 -4.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-59   LEU-60  4.9 4.9 -1.7 23.8 67.5 67.4 -12.6
 LEU-60   TYR-61  2.3 2.6 -8.3 3.4 95.1 101.1 -27.4
 TYR-61   THR-62  1.5 1.1 6.5 -11.4 118.9 121.5 58.7
 THR-62   VAL-63  4.9 4.6 -30.7 31.5 131.0 130.8 -32.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees