Ribosome Recycling Factor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-22   ASP-23  14.8 14.9 -12.2 15.8 106.9 106.7 126.5
 ASP-23   LEU-24  13.2 12.9 -1.5 -7.7 147.4 150.7 -147.7
 LEU-24   SER-25  12.5 12.5 8.4 -12.6 99.0 92.4 56.8
 SER-25   THR-26  11.3 11.7 -3.7 6.1 68.8 67.9 11.1
 THR-26   ILE-27  8.1 8.4 -12.4 13.7 139.3 138.9 5.4
 ILE-27   ARG-28  6.9 7.1 2.4 -9.4 74.6 71.3 6.7
 ARG-28   THR-29  4.0 4.6 11.8 -8.1 28.5 17.5 67.6
 THR-29   GLY-30  6.1 6.1 3.5 6.6 81.4 79.2 121.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-85   ASP-86  4.3 4.0 -12.7 21.0 10.3 19.3 -19.2
 ASP-86   LEU-87  4.0 4.3 -28.3 20.2 54.6 55.1 125.7
 LEU-87   GLY-88  2.0 1.9 2.5 -16.4 132.1 127.6 150.9
 GLY-88   VAL-89  5.4 5.4 8.9 -2.2 91.9 88.9 -71.2
 GLY-88   VAL-89  5.4 5.4 8.9 -2.2 91.9 88.9 -71.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-88   VAL-89  5.4 5.4 8.9 -2.2 91.9 88.9 -71.2
 GLY-88   VAL-89  5.4 5.4 8.9 -2.2 91.9 88.9 -71.2
 VAL-89   ASN-90  7.7 7.3 -3.4 16.7 50.3 53.9 -125.9
 ASN-90   PRO-91  11.1 10.9 12.0 -16.3 115.8 131.6 209.7
 PRO-91   THR-92  11.7 11.6 -0.1 -29.2 73.7 75.6 34.0
 THR-92   ASN-93  15.2 15.1 -4.4 -15.9 34.4 40.1 288.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-103   GLN-104  8.7 8.7 0.4 2.9 123.8 128.6 -126.8
 GLN-104   LEU-105  7.1 7.4 1.2 13.8 88.8 91.0 61.5
 LEU-105   THR-106  3.3 3.6 -6.9 -6.2 24.7 36.2 177.9
 THR-106   GLU-107  3.1 3.8 -16.2 18.5 70.4 65.7 -76.2
 GLU-107   GLU-108  1.0 1.6 -6.3 -7.4 112.2 109.1 27.3
 GLU-108   ARG-109  4.5 4.7 8.7 -4.8 27.4 30.5 -17.5
 ARG-109   ARG-110  3.2 3.2 4.2 0.7 93.2 94.5 71.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees