Damage-Specific DNA Binding Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-391   ASN-392  3.3 3.5 14.3 -26.6 59.7 63.8 -19.9
 ASN-392   GLY-393  1.4 0.9 16.5 52.4 6.8 21.9 101.4
 GLY-393   ILE-394  1.5 1.6 -3.5 20.7 123.4 127.3 25.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-704   ASP-705  5.2 5.1 32.3 -26.4 38.3 56.0 4.1
 ASP-705   GLU-706  6.1 6.6 144.4 93.9 85.6 94.3 29.3
 GLU-706   ILE-707  7.1 5.9 -140.4 -58.6 82.5 143.5 58.3
 ILE-707   GLN-708  6.2 6.7 -140.9 -62.9 146.3 135.8 244.6
 GLN-708   LYS-709  6.7 4.6 -4.7 -102.0 99.0 130.4 -129.1
 LYS-709   LEU-710  5.1 4.5 -156.3 20.9 122.4 122.1 -97.6
 LEU-710   HIS-711  3.4 3.2 -7.3 -0.9 68.5 73.6 -11.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees