Protein Rdmb

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-159   ASP-160  4.5 4.8 -11.7 9.1 90.9 83.3 16.5
 ASP-160   ALA-161  7.3 7.5 -0.9 6.5 96.9 95.8 33.5
 ALA-161   LEU-162  9.3 10.0 18.4 -32.0 146.9 140.0 25.1
 SER-164   CYS-165  13.1 14.3 -169.2 46.2 60.5 101.6 345.4
 CYS-165   ASP-166  16.5 13.8 -41.7 -16.4 124.1 167.9 -196.0
 ASP-176   ALA-177  24.9 27.3 173.3 23.8 121.6 161.3 -708.9
 ALA-177   TYR-178  27.3 26.2 -81.9 -12.4 46.8 76.6 227.1
 TYR-178   ASP-179  27.6 27.1 -35.9 13.8 105.3 124.2 -26.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-286   ASP-287  15.8 16.7 12.4 -4.6 84.0 91.0 15.6
 ASP-287   ARG-288  12.6 13.4 15.6 -167.3 48.6 61.5 -364.2
 ALA-289   ASP-290  12.5 17.8 152.4 41.5 40.0 81.9 -704.6
 ARG-298   PHE-299  12.2 12.8 -25.3 -0.9 56.2 48.5 45.8
 PHE-299   PHE-300  12.7 13.1 -2.6 10.6 39.8 42.3 -22.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-313   GLY-314  5.9 6.0 -7.7 -30.0 71.9 57.6 87.2
 GLY-314   ARG-315  4.2 4.4 10.2 -12.9 149.0 125.3 -1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-336   ARG-337  22.0 22.0 10.7 -19.3 99.7 103.8 14.4
 ARG-337   THR-338  22.5 22.4 -16.6 -32.0 74.2 65.2 103.5
 THR-338   SER-339  20.9 20.5 5.3 -17.5 150.8 105.4 -61.8
 SER-339   GLY-340  21.2 22.3 -37.0 83.3 78.7 54.3 -84.5
 GLY-340   SER-341  19.5 22.1 23.5 -91.4 156.3 159.0 273.4
 SER-341   THR-342  18.9 22.5 17.8 -3.5 94.1 105.9 8.5
 THR-342   THR-343  22.1 23.8 -2.0 29.6 82.2 56.0 -37.2
 THR-343   LEU-344  20.7 20.8 -14.9 35.7 131.3 120.1 52.1
 LEU-344   PRO-345  18.3 17.9 -21.6 1.9 162.1 132.8 -59.2
 PRO-345   PHE-346  18.5 17.2 -86.6 12.5 107.3 155.1 -196.8
 PHE-346   ASP-347  16.1 15.9 52.8 3.8 75.5 85.5 42.7
 ASP-347   PHE-348  17.1 17.8 8.7 31.9 95.3 99.6 -4.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees