Allograft Inflammatory Factor 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-63   ASP-64  3.2 3.2 1.5 6.5 40.0 43.8 13.6
 ASP-64   ILE-65  0.7 0.7 -0.3 -8.6 79.3 81.5 35.2
 ILE-65   ASP-66  3.4 3.5 9.2 -24.7 99.1 100.2 22.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-98   GLU-99  11.4 11.7 125.4 -99.0 48.8 23.6 80.4
 GLU-99   THR-100  9.9 10.2 -39.9 -9.6 93.4 88.0 -24.1
 THR-100   PHE-101  6.3 6.5 17.9 -20.2 155.8 146.8 14.3
 PHE-101   SER-102  3.9 4.2 49.9 -18.7 76.7 75.7 22.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees