Farnesyl Diphosphate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-238   PHE-239  4.2 4.2 -1.9 -11.1 97.6 101.7 -67.2
 PHE-239   GLN-240  7.5 7.6 12.5 -7.4 22.3 29.8 41.7
 GLN-240   ILE-241  7.6 7.9 6.0 1.2 41.2 37.3 80.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-326   ALA-327  7.5 7.2 0.0 3.6 114.1 112.2 -5.4
 ALA-327   LEU-328  8.3 8.1 2.2 -7.7 70.9 67.5 -35.7
 LEU-328   ILE-329  5.0 5.0 5.6 4.9 28.3 28.3 85.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees