Urease Beta Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-312   GLU-313  7.6 7.5 30.6 -35.1 97.1 99.5 5.3
 GLU-313   HIS-314  4.9 4.6 0.0 6.8 144.5 141.5 26.3
 HIS-314   MET-315  2.8 2.9 11.6 15.6 47.0 51.5 59.7
 MET-315   ASP-316  5.8 6.0 -7.8 -4.5 76.8 89.2 4.9
 ASP-316   MET-317  7.6 7.7 -33.0 57.3 100.1 106.2 12.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-337   ARG-338  4.0 4.4 54.0 -31.6 60.0 76.6 21.8
 ARG-338   ILE-339  1.8 2.1 13.7 3.0 24.1 23.6 48.5
 ILE-339   ARG-340  3.4 3.5 -1.0 -1.0 90.2 90.5 1.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees