Threonyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-396   VAL-397  6.3 6.1 0.5 -2.6 151.1 144.1 29.7
 VAL-397   ASN-398  6.9 6.9 -0.4 3.2 47.1 41.7 -16.5
 ASN-398   GLY-399  6.8 6.7 -9.0 3.7 99.7 94.0 21.0
 GLY-399   CYS-400  4.1 4.0 5.9 1.9 116.1 109.3 -5.4
 CYS-400   ILE-401  2.1 2.2 -7.9 0.3 3.7 2.8 79.1
 ILE-401   ARG-402  3.2 3.1 3.0 0.0 109.8 111.5 -56.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-406   MET-407  5.1 5.1 -6.8 8.1 96.2 94.9 7.5
 MET-407   TYR-408  6.7 6.8 -0.7 -4.7 154.7 153.9 -50.1
 TYR-408   SER-409  6.1 6.5 8.7 3.6 47.6 48.1 73.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-417   VAL-418  7.8 8.5 -7.1 7.2 159.7 154.2 -4.1
 VAL-418   LYS-419  9.3 9.5 -6.7 5.7 91.6 91.4 0.2
 LYS-419   LEU-420  12.9 13.0 27.8 -10.8 18.5 21.6 152.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-464   LYS-465  16.8 16.8 -6.2 12.8 96.8 100.1 37.7
 LYS-465   ILE-466  13.7 14.0 -25.9 29.9 156.1 150.3 39.7
 ILE-466   GLU-467  11.2 11.3 -5.4 12.1 103.2 104.1 59.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees