Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-64   TRP-65  2.9 3.8 -7.6 8.1 65.0 65.4 -3.5
 TRP-65   LYS-66  0.9 1.6 -4.8 3.4 36.7 36.1 8.1
 LYS-66   LYS-67  3.1 1.5 -16.7 18.9 34.5 32.9 -8.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-87   THR-88  12.4 12.7 16.9 -26.9 78.7 76.5 -21.2
 THR-88   THR-89  12.9 12.7 24.8 6.6 110.4 103.6 -43.9
 THR-89   GLU-90  10.1 9.5 -176.6 -52.1 3.8 36.0 -310.1
 GLU-90   TYR-91  10.3 10.3 35.4 -56.6 107.3 119.1 -6.3
 TYR-91   TYR-92  14.1 7.0 169.6 -173.8 97.6 121.2 25.9
 TYR-92   TYR-93  13.7 5.0 -103.5 45.8 78.7 75.4 128.9
 TYR-93   PRO-94  10.5 7.2 -143.2 -5.7 26.0 55.2 313.6
 PRO-94   LEU-95  12.2 10.0 18.6 -24.7 139.5 162.8 17.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-113   GLU-114  7.0 7.3 -60.9 -1.5 52.0 7.9 140.3
 GLU-114   LYS-115  10.0 8.8 25.3 9.9 146.4 117.0 -57.9
 LYS-115   MET-116  8.4 7.0 26.4 -83.6 123.3 119.5 64.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-121   LYS-122  9.9 8.9 20.7 -6.3 28.4 17.5 36.7
 LYS-122   TYR-123  7.9 6.9 14.8 -17.8 60.8 60.6 -9.6
 TYR-123   ILE-124  6.3 7.2 3.8 -6.2 69.1 78.7 8.5
 ILE-124   ASP-125  10.0 10.9 13.2 -15.3 35.9 41.5 -1.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees