Undecaprenyl Pyrophosphate Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-65   THR-66  7.4 7.0 -4.1 3.9 142.9 145.1 -10.3
 THR-66   LEU-67  6.1 5.9 1.4 -4.7 48.8 51.6 -1.9
 LEU-67   TYR-68  7.6 7.4 5.0 -40.2 22.2 23.7 -260.7
 TYR-68   ALA-69  7.4 7.4 7.6 23.6 75.9 66.7 53.0
 ALA-69   PHE-70  8.4 9.9 142.6 81.1 18.8 18.1 -1113.0
 PHE-70   SER-71  7.1 10.8 7.1 -27.4 64.1 49.6 -47.5
 SER-72   GLU-73  2.1 16.7 -0.4 28.9 156.3 43.6 24.4
 GLU-87   LEU-88  17.7 17.5 0.0 0.5 41.3 42.8 5.0
 LEU-88   PHE-89  16.8 17.0 5.9 -5.5 129.0 130.1 -12.1
 PHE-89   VAL-90  13.5 13.6 1.3 2.9 129.2 129.5 -36.9
 VAL-90   TRP-91  15.7 15.7 -1.9 2.0 42.3 42.7 0.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-140   ILE-141  2.2 1.9 -2.8 -5.8 45.6 45.7 21.2
 ILE-141   ALA-142  4.3 4.1 10.3 7.3 148.9 151.4 -124.1
 ALA-142   ALA-143  3.0 3.0 28.2 -11.0 133.1 121.7 -114.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees