Retinoblastoma-Associated Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-560   LEU-561  3.1 3.3 13.3 -7.7 107.9 109.4 -2.6
 LEU-561   ALA-562  5.7 6.0 12.4 -27.5 144.6 144.8 150.7
 ALA-562   TRP-563  4.7 4.7 34.8 -21.7 76.4 84.3 -43.1
 TRP-563   LEU-564  2.9 2.7 -17.2 2.7 139.3 129.7 -130.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-575   SER-576  10.0 9.5 -21.3 18.1 50.7 56.6 75.8
 SER-576   LYS-577  7.3 7.3 -44.9 49.7 82.2 92.6 43.7
 LYS-577   LEU-578  10.3 10.1 -41.7 52.6 59.6 54.5 -61.7
 LEU-578   VAL-579  12.4 12.3 -115.7 108.1 34.0 16.6 141.4
 VAL-579   PRO-580  10.0 10.9 39.7 5.1 88.3 101.2 -71.2
 PRO-580   ARG-581  6.9 8.1 -6.0 14.6 47.9 63.3 -84.8
 ARG-581   GLY-582  3.5 4.7 97.6 176.7 85.7 53.6 -312.7
 GLY-582   SER-583  4.3 4.0 -135.8 -116.9 81.0 148.4 924.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-652   LYS-653  8.1 8.2 2.5 -4.8 134.9 140.8 -9.5
 LYS-653   VAL-654  9.3 9.3 0.8 -5.1 155.3 150.6 50.4
 VAL-654   TYR-655  7.7 7.5 8.9 -9.7 97.5 94.1 14.9
 TYR-655   ARG-656  10.2 10.0 -2.7 -5.9 80.1 78.7 22.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees