Rna-Dependent Rna-Polymerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-18   SER-19  9.2 9.5 -0.8 -14.7 55.9 62.3 144.0
 SER-19   LYS-20  6.4 6.4 13.6 -24.1 103.1 100.3 11.6
 LYS-20   LEU-21  3.6 3.7 8.7 -27.1 124.7 120.1 150.5
 LEU-21   PRO-22  4.8 4.8 3.4 1.7 61.5 49.5 6.8
 PRO-22   ILE-23  8.5 7.9 -3.7 48.6 113.7 106.1 179.1
 PRO-22   ILE-23  8.5 7.9 -3.7 48.6 113.7 106.1 179.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-22   ILE-23  8.5 7.9 -3.7 48.6 113.7 106.1 179.1
 PRO-22   ILE-23  8.5 7.9 -3.7 48.6 113.7 106.1 179.1
 ILE-23   ASN-24  10.3 9.5 -35.2 8.8 86.4 106.5 117.3
 ASN-24   ALA-25  14.0 12.4 -45.6 -2.9 111.8 126.9 -258.4
 ALA-25   LEU-26  16.8 15.2 -32.4 37.3 157.2 171.9 8.9
 LEU-26   SER-27  15.4 15.1 -29.8 -6.0 96.9 111.2 38.9
 SER-27   ASN-28  11.8 11.3 11.8 -0.2 71.1 91.0 114.2
 ASN-28   SER-29  13.0 11.9 2.5 7.2 26.1 41.4 111.8
 SER-29   LEU-30  14.7 14.3 -14.8 5.7 133.3 137.1 -143.5
 LEU-30   LEU-31  11.2 11.2 5.9 10.5 106.1 105.0 144.2
 LEU-31   ARG-32  9.2 9.0 13.9 -10.2 157.6 162.6 -64.6
 ARG-32   HIS-33  10.6 10.3 -1.8 9.2 57.7 55.0 -123.0
 HIS-33   HIS-34  8.1 8.1 -9.9 8.0 75.3 77.9 105.1
 HIS-34   ASN-35  5.4 5.5 10.6 -14.8 111.9 117.7 -30.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-88   CYS-89  33.9 34.4 4.0 -7.8 41.9 44.1 -11.6
 CYS-89   LYS-90  34.1 34.7 -1.5 2.1 76.1 69.4 4.7
 LYS-90   LEU-91  32.2 33.2 -4.5 -14.7 83.3 81.5 0.2
 LEU-91   THR-92  29.2 30.1 14.8 1.2 25.5 32.4 132.2
 THR-92   PRO-93  28.9 29.5 1.8 3.2 73.8 76.0 13.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-94   HIS-95  27.3 26.7 0.0 -12.8 21.8 20.5 104.4
 HIS-95   SER-96  25.0 24.6 14.4 -25.3 101.4 112.2 191.3
 SER-96   ALA-97  25.8 25.5 13.1 7.5 155.4 151.7 -245.7
 ALA-97   LYS-98  26.5 26.5 1.0 2.8 94.5 91.1 96.1
 LYS-98   SER-99  29.9 29.9 10.7 -16.0 101.0 102.7 2.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-369   VAL-370  7.2 7.0 -1.0 -1.5 40.6 41.6 7.1
 VAL-370   SER-371  5.9 5.8 0.0 0.3 93.2 91.6 -56.3
 SER-371   VAL-372  5.3 5.3 -10.6 2.0 37.1 35.0 55.2
 VAL-372   ALA-373  5.5 5.5 9.8 -16.3 103.9 100.5 56.3
 VAL-372   ALA-373  5.5 5.5 9.8 -16.3 103.9 100.5 56.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-372   ALA-373  5.5 5.5 9.8 -16.3 103.9 100.5 56.3
 VAL-372   ALA-373  5.5 5.5 9.8 -16.3 103.9 100.5 56.3
 ALA-373   HIS-374  6.6 6.8 -8.5 1.8 158.9 158.3 -73.9
 HIS-374   ASP-375  8.3 8.2 6.2 -10.6 90.9 89.6 78.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-377   GLY-378  11.8 11.6 10.0 -1.6 82.4 82.1 -55.2
 GLY-378   LYS-379  11.2 10.9 -0.9 1.6 78.0 80.9 15.9
 LYS-379   ARG-380  7.6 7.3 8.5 -10.9 33.4 30.6 -5.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-381   TYR-382  3.0 2.9 -0.4 -7.7 40.9 40.6 140.6
 TYR-382   TYR-383  2.0 1.9 9.8 -8.4 124.8 127.7 -5.8
 TYR-383   LEU-384  0.8 0.8 1.3 -5.3 140.1 142.3 -38.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-386   ASP-387  3.4 3.3 -0.6 -3.2 131.5 132.1 40.7
 ASP-387   PRO-388  4.2 4.3 -0.1 2.8 117.2 117.7 -10.5
 PRO-388   THR-389  1.7 2.0 -2.4 8.0 176.0 175.7 47.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-391   LEU-392  3.1 2.9 3.4 6.6 125.4 124.1 -45.5
 LEU-392   ALA-393  3.5 3.7 -3.5 -1.1 11.8 15.0 2.6
 ALA-393   ARG-394  2.3 2.4 2.7 -4.3 98.0 95.8 25.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-397   GLU-398  7.7 7.4 -2.3 6.7 78.9 81.1 55.0
 GLU-398   THR-399  10.8 10.7 -3.8 -14.4 92.0 97.6 -66.5
 THR-399   ALA-400  12.0 12.1 -2.0 26.6 152.8 168.0 265.4
 ALA-400   ARG-401  12.6 11.5 -31.1 21.2 105.1 113.5 -4.5
 ARG-401   HIS-402  13.6 12.7 -15.6 24.7 36.0 41.8 -72.9
 HIS-402   THR-403  16.2 15.7 8.3 -10.4 84.9 101.5 14.7
 THR-403   PRO-404  15.1 15.2 -33.1 20.5 50.0 47.8 17.7
 PRO-404   VAL-405  17.7 18.2 -6.5 16.9 18.5 26.1 -93.0
 VAL-405   ASN-406  15.4 15.7 4.5 -11.5 94.2 100.6 6.4
 ASN-406   SER-407  13.5 13.8 -20.5 11.3 48.5 51.2 46.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-417   THR-418  5.8 5.7 -7.7 9.5 58.7 60.3 63.1
 THR-418   LEU-419  4.4 4.5 -4.8 -2.6 67.3 67.8 -43.2
 LEU-419   TRP-420  7.3 7.6 -1.2 10.0 25.9 22.5 -10.8
 TRP-420   ALA-421  6.4 6.7 -9.1 3.1 81.0 83.2 -40.8
 ALA-421   ARG-422  6.8 7.0 11.0 -7.3 76.4 72.6 30.1
 THR-427   HIS-428  14.9 15.1 -1.1 -0.3 19.5 18.7 -5.7
 HIS-428   PHE-429  14.1 14.2 3.6 1.2 97.2 96.6 -64.7
 PHE-429   PHE-430  14.8 15.1 2.6 -6.1 66.7 67.2 44.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-472   SER-473  12.2 12.1 -0.7 4.3 106.5 110.2 27.8
 SER-473   LEU-474  11.8 11.9 2.5 -2.5 91.1 91.7 -54.9
 LEU-474   HIS-475  8.9 9.1 -9.0 11.8 62.6 63.1 -7.6
 HIS-475   SER-476  10.9 11.1 -3.4 7.2 105.0 101.9 94.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-480   GLU-481  12.1 12.0 1.5 -0.6 118.3 118.8 -43.8
 GLU-481   ILE-482  8.7 8.7 -1.5 -3.2 54.7 56.2 69.5
 ILE-482   ASN-483  11.0 11.0 4.1 -6.4 145.6 147.2 26.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-489   ARG-490  9.8 9.8 -2.1 4.1 140.4 141.7 34.1
 ARG-490   LYS-491  12.3 12.3 -8.8 9.6 137.4 138.6 -28.4
 LYS-491   LEU-492  9.9 10.1 -4.2 9.1 123.2 124.6 41.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees