D-Lactate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-99   PRO-100  9.1 9.2 11.1 -14.8 87.0 82.3 20.4
 PRO-100   VAL-101  10.2 10.1 2.4 -0.8 73.4 77.7 18.2
 VAL-101   TYR-102  7.4 7.2 82.4 -69.8 56.6 63.4 29.4
 TYR-102   SER-103  4.9 4.3 -0.3 3.7 107.3 102.2 -2.0
 SER-103   PRO-104  6.1 5.6 16.1 -6.5 79.1 79.3 35.9
 PRO-104   ASN-105  9.9 9.3 -7.0 2.4 130.5 127.9 -13.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-301   THR-302  5.1 4.8 3.1 -1.0 88.7 94.3 1.9
 THR-302   THR-303  3.5 3.4 1.5 1.6 65.7 65.6 22.5
 THR-303   HIS-304  2.2 2.8 6.2 -5.1 5.5 3.7 10.2
 HIS-304   ALA-305  2.7 3.1 0.8 1.2 73.9 75.1 -14.2
 ALA-305   VAL-306  2.7 2.0 -1.3 1.7 81.6 83.3 38.7
 VAL-306   ARG-307  2.8 2.3 -2.9 -2.3 128.9 125.4 -7.9
 ARG-307   ASN-308  3.2 3.5 14.2 -7.3 35.8 30.7 17.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees