Carbamoyl Phosphate Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-6690   ALA-6691  4.1 3.8 26.2 -20.3 51.4 39.0 20.4
 ALA-6691   ASN-6692  1.5 1.4 -20.0 -15.4 67.1 69.6 59.4
 ASN-6692   ALA-6693  2.3 2.3 -1.2 12.1 134.6 141.7 24.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-6714   ARG-6715  7.6 7.8 -9.4 -10.1 114.9 107.1 -16.0
 ARG-6715   ALA-6716  9.1 8.8 1.5 -11.8 109.9 117.2 18.8
 ALA-6724   MET-6725  11.7 12.9 -106.4 41.5 56.6 61.8 151.8
 MET-6725   GLU-6726  8.1 9.2 -7.2 3.6 120.0 113.2 -40.1
 GLU-6726   ILE-6727  7.1 7.8 -7.5 14.6 50.4 54.3 -20.6
 ILE-6727   VAL-6728  5.9 6.0 -2.6 -4.1 82.4 78.0 -1.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-6752   ASP-6753  6.0 6.2 -28.0 27.7 86.0 83.9 47.6
 ASP-6753   HIS-6754  2.4 2.6 -11.2 9.5 113.7 110.0 -6.4
 HIS-6754   PHE-6755  2.6 2.1 -4.7 21.6 149.7 146.8 66.4
 PHE-6755   LEU-6756  3.1 2.8 12.4 -22.5 83.7 92.6 -3.8
 LEU-6756   ASP-6757  5.5 5.0 -1.3 15.1 153.3 150.4 45.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees