Hypothetical Methylmalonyl-Coa Decarboxylase Alpha Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-195   ALA-196  8.9 8.3 -23.2 59.6 68.2 79.7 61.9
 ALA-196   TYR-197  6.1 7.7 178.4 19.4 132.7 71.7 -2.2
 TYR-197   TYR-198  4.0 4.3 -172.0 -13.8 69.4 65.3 -247.2
 TYR-198   MET-199  0.8 1.0 -3.2 -0.8 82.3 79.5 30.7
 MET-199   PHE-200  3.5 3.2 7.2 -3.3 122.3 122.2 -13.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-202   GLY-203  7.4 6.9 -5.6 8.7 85.3 88.2 8.7
 GLY-203   PRO-204  3.8 3.3 3.8 -6.5 130.2 125.0 11.3
 PRO-204   GLU-205  2.8 2.3 -15.3 8.9 11.7 9.6 20.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-222   ALA-223  3.6 3.6 -21.5 -3.9 30.3 25.0 81.1
 ALA-223   VAL-224  3.7 3.4 9.3 -10.8 100.3 102.8 3.4
 VAL-224   VAL-225  7.5 7.1 -4.4 5.7 110.9 113.1 8.5
 VAL-225   HIS-226  8.3 8.0 4.3 0.2 120.1 119.9 -2.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees