Vinculin Isoform 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-373   LEU-374  10.1 10.4 -23.7 25.6 83.2 95.4 1.5
 LEU-374   GLU-375  7.2 7.8 11.7 -16.2 145.8 131.2 7.2
 GLU-375   ALA-376  8.8 9.6 -12.2 -7.8 36.0 25.1 48.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-480   VAL-481  6.1 5.9 9.6 -13.6 114.6 126.8 -1.0
 VAL-481   ALA-482  2.4 2.4 11.6 -33.2 148.6 143.5 52.7
 ALA-482   ASN-483  3.7 3.6 12.3 -0.3 141.3 129.0 -25.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees