Plasmepsin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-19   GLY-20  6.9 5.2 -147.5 71.2 117.1 115.5 -196.6
 GLY-20   GLU-21  7.0 6.0 -5.3 0.5 52.5 63.4 43.4
 GLU-21   VAL-22  9.0 8.9 1.1 2.4 59.3 50.3 16.0
 VAL-22   GLY-23  12.4 12.2 -6.4 1.3 45.9 48.8 37.8
 GLY-23   ASP-24  14.5 14.5 -1.6 -21.4 59.4 56.7 102.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-140   VAL-141  4.3 4.1 -7.2 4.5 52.4 49.8 7.7
 VAL-141   GLU-142  6.6 6.3 4.2 -14.4 63.8 65.9 -29.8
 GLU-142   LEU-143  9.6 9.4 12.3 -4.8 49.9 46.5 49.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-154   THR-155  3.6 3.8 -0.7 2.1 100.9 104.4 10.5
 THR-155   PHE-156  6.9 7.3 5.5 -2.9 130.1 128.4 -10.3
 PHE-156   TYR-157  9.0 9.6 -3.7 5.2 75.9 76.2 -17.9
 TYR-157   LEU-158  12.0 12.4 16.4 -48.8 120.4 122.2 39.7
 LEU-158   PRO-159  13.9 14.9 -49.1 24.6 38.7 71.7 28.5
 PRO-159   VAL-160  15.7 17.6 -37.6 70.9 107.7 102.6 7.1
 VAL-160   HIS-161  19.5 21.0 -149.7 -41.7 29.8 37.0 -868.5
 HIS-161   ASP-162  20.9 22.2 -155.8 -163.6 45.6 67.9 -203.6
 ASP-162   VAL-163  21.5 19.8 59.6 55.3 80.0 50.0 520.5
 VAL-163   HIS-164  21.5 19.8 39.2 69.8 100.1 111.1 597.2
 HIS-164   ALA-165  18.0 18.0 -141.9 -60.0 107.4 83.1 352.2
 ALA-165   GLY-166  14.4 14.8 -15.6 -39.5 152.6 148.7 -304.7
 GLY-166   TYR-167  12.4 12.4 -11.7 17.5 85.6 75.7 -3.1
 TYR-167   LEU-168  9.0 9.4 -15.4 -1.4 151.2 142.9 -102.9
 LEU-168   THR-169  6.1 6.2 4.8 -1.6 96.7 100.4 -12.7
 THR-169   ILE-170  5.5 5.5 4.5 -1.8 46.2 48.8 4.0
 ILE-170   GLY-171  3.6 3.6 1.2 -17.8 87.4 85.6 -42.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-184   GLU-185  11.5 11.4 -10.5 -1.1 147.8 142.9 -76.1
 GLU-185   LYS-186  10.1 10.0 7.3 -9.0 83.3 84.1 18.8
 LYS-186   LEU-187  6.7 6.6 12.8 -8.1 87.5 87.2 36.9
 LEU-187   ASN-188  5.2 5.1 -13.0 -5.0 158.6 153.9 -115.6
 ASN-188   HIS-189  6.1 6.6 16.1 35.1 89.6 97.5 -41.9
 HIS-189   ASP-190  5.3 6.6 14.3 -4.8 164.8 120.7 -25.2
 ASP-190   LEU-191  4.7 5.3 -80.7 7.7 68.4 26.0 374.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees