N-Methyl-D-Aspartate Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-143   GLN-144  8.8 9.5 -28.6 -32.2 66.6 63.2 104.3
 GLN-144   GLY-145  5.4 5.8 53.8 2.4 69.4 46.9 126.3
 GLY-145   LEU-146  2.1 2.4 29.8 -2.7 126.1 113.1 -50.0
 LEU-146   THR-147  1.8 1.4 -12.0 -5.2 64.7 66.7 30.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-239   THR-240  8.2 8.1 5.4 -13.0 163.8 162.8 32.0
 THR-240   THR-241  7.3 7.2 8.1 62.9 113.0 119.6 -151.2
 THR-241   GLY-242  10.2 9.6 -131.7 2.8 7.4 67.4 429.2
 GLY-242   GLU-243  11.0 9.4 65.8 20.3 112.3 135.5 -214.9
 GLU-243   LEU-244  9.9 8.8 2.1 -8.7 102.3 112.6 -15.8
 LEU-244   PHE-245  6.2 5.4 -7.6 39.9 12.2 22.9 -117.0
 PHE-245   PHE-246  4.8 5.4 -167.1 142.9 74.0 47.6 34.2
 PHE-246   ARG-247  1.7 2.3 83.6 -33.9 67.8 60.0 113.5
 ARG-247   SER-248  3.5 3.9 -16.2 7.6 61.3 72.5 31.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees