Preprotein Translocase Seca Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-220   THR-221  3.5 3.6 -7.8 -1.2 30.1 32.0 93.9
 THR-221   PRO-222  4.4 4.3 1.7 -3.5 71.4 72.0 101.1
 PRO-222   LEU-223  6.5 6.7 -19.4 25.2 86.5 73.8 193.7
 LEU-223   ILE-224  10.3 10.3 3.0 6.5 143.4 149.3 -304.4
 ILE-224   ILE-225  11.4 11.5 -15.4 12.6 66.1 64.8 -131.0
 ARG-220   THR-221  39.5 39.2 -7.8 -1.2 151.2 152.0 -310.5
 THR-221   PRO-222  36.7 36.5 1.7 -3.5 102.1 102.4 -411.4
 PRO-222   LEU-223  33.2 33.0 -19.4 25.2 77.3 88.0 -515.3
 LEU-223   ILE-224  29.7 29.7 3.0 6.5 23.4 24.9 904.5
 ILE-224   ILE-225  28.2 28.3 -15.4 12.6 97.9 99.6 460.8
 ILE-225   SER-226  25.1 25.1 -9.7 5.2 175.4 176.3 -421.6
 ARG-220   THR-221  3.5 3.6 -7.8 -1.2 30.1 32.0 93.9
 THR-221   PRO-222  4.4 4.3 1.7 -3.5 71.4 72.0 101.1
 PRO-222   LEU-223  6.5 6.7 -19.4 25.2 86.5 73.8 193.7
 LEU-223   ILE-224  10.3 10.3 3.0 6.5 143.4 149.3 -304.4
 ILE-224   ILE-225  11.4 11.5 -15.4 12.6 66.1 64.8 -131.0
 ARG-220   THR-221  39.5 39.2 -7.8 -1.2 151.2 152.0 -310.5
 THR-221   PRO-222  36.7 36.5 1.7 -3.5 102.1 102.4 -411.4
 PRO-222   LEU-223  33.2 33.0 -19.4 25.2 77.3 88.0 -515.3
 LEU-223   ILE-224  29.7 29.7 3.0 6.5 23.4 24.9 904.5
 ILE-224   ILE-225  28.2 28.3 -15.4 12.6 97.9 99.6 460.8
 ILE-225   SER-226  25.1 25.1 -9.7 5.2 175.4 176.3 -421.6
 SER-226   GLY-227  25.4 25.5 -2.1 1.1 104.8 105.1 54.8
 GLY-227   PRO-228  22.3 22.4 -1.0 1.5 152.4 152.2 45.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-366   ALA-367  16.1 16.0 -1.5 5.7 17.7 17.9 -72.2
 ALA-367   THR-368  15.4 15.0 18.4 -29.1 114.4 112.6 4.9
 LEU-366   ALA-367  23.1 23.2 -1.5 5.7 140.7 140.0 136.2
 LEU-366   ALA-367  16.1 16.0 -1.5 5.7 17.7 17.9 -72.2
 ALA-367   THR-368  15.4 15.0 18.4 -29.1 114.4 112.6 4.9
 GLU-362   ASN-363  27.3 27.4 2.6 0.6 44.2 43.9 49.8
 ASN-363   GLN-364  26.4 26.6 -3.2 1.8 89.9 89.2 138.7
 GLN-364   THR-365  26.6 26.7 0.2 0.5 28.5 28.2 68.6
 THR-365   LEU-366  26.6 26.7 0.8 -1.4 89.1 90.0 -219.6
 LEU-366   ALA-367  23.1 23.2 -1.5 5.7 140.7 140.0 136.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-800   LEU-801  37.2 37.3 -2.0 3.7 95.3 94.9 92.4
 LEU-801   ASN-802  37.9 37.8 -0.5 2.9 64.5 65.1 -82.6
 ASN-802   PRO-803  40.9 40.9 2.2 0.0 57.5 57.1 363.1
 PRO-803   GLU-804  43.1 43.2 -28.0 31.7 78.4 77.7 251.9
 GLU-804   VAL-805  46.8 46.8 -10.9 6.2 148.2 144.7 -279.9
 VAL-805   HIS-806  46.4 46.6 -2.1 4.5 72.6 74.9 -312.2
 HIS-806   PRO-807  46.7 46.9 5.9 -7.5 73.4 74.0 59.1
 PRO-807   GLU-808  44.4 44.6 5.5 -1.1 51.8 51.1 138.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-857   GLU-858  20.4 20.6 1.1 -0.1 22.9 22.7 5.5
 GLU-858   ALA-859  20.6 20.8 -2.1 3.5 93.1 92.8 7.0
 ALA-859   GLU-860  21.4 21.7 0.1 -4.3 123.9 123.5 45.0
 GLU-860   LEU-861  18.8 19.1 2.9 1.7 47.7 51.3 -85.4
 LEU-861   SER-862  16.5 16.6 0.4 -2.4 37.6 37.3 -66.3
 SER-862   PRO-863  18.4 18.5 -2.2 6.3 114.9 117.4 293.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees