Proliferating Cell Nuclear Antigen

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-13   ALA-14  16.9 16.4 -1.4 6.5 97.2 98.3 -3.3
 ALA-14   GLN-15  16.3 16.2 -3.9 7.0 159.9 156.6 39.9
 GLN-15   LEU-16  16.3 15.8 -4.5 0.1 102.8 97.5 -23.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-19   ALA-20  11.2 10.5 -10.6 23.6 96.0 106.1 23.2
 ALA-20   SER-21  7.9 7.2 -29.0 48.1 111.3 102.5 55.6
 SER-21   LYS-22  7.6 8.7 -31.1 -7.3 60.3 39.7 284.6
 LYS-22   LEU-23  9.0 9.3 9.3 -21.5 92.1 100.6 9.3
 LEU-23   ILE-24  6.5 6.0 -18.0 9.6 147.9 147.5 -42.5
 ILE-24   ASP-25  5.8 5.1 -20.0 5.9 136.9 132.2 -154.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-45   VAL-46  7.8 7.5 -2.1 3.1 154.7 153.4 2.2
 VAL-46   VAL-47  5.8 5.6 -2.6 6.9 84.6 84.5 15.4
 VAL-47   LEU-48  2.4 2.1 -5.0 -2.3 28.9 28.7 76.7
 LEU-48   ILE-49  3.3 3.1 8.2 -9.3 82.7 84.8 -14.3
 LEU-48   ILE-49  3.3 3.1 8.2 -9.3 82.7 84.8 -14.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-48   ILE-49  3.3 3.1 8.2 -9.3 82.7 84.8 -14.3
 LEU-48   ILE-49  3.3 3.1 8.2 -9.3 82.7 84.8 -14.3
 ILE-49   ASP-50  3.1 3.4 0.0 6.5 131.1 133.4 70.2
 ASP-50   LEU-51  6.5 6.8 -10.5 6.5 97.1 96.3 27.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-126   GLU-127  15.3 12.4 -126.5 -38.0 114.5 122.5 -831.4
 GLU-127   LEU-128  16.6 15.8 -65.4 20.7 130.9 157.2 -471.8
 LEU-128   PRO-129  14.3 14.4 50.2 2.2 48.7 43.2 406.7
 PRO-129   PHE-130  16.0 16.3 -8.0 4.6 126.1 133.1 -20.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-229   GLU-230  8.0 8.1 2.2 -23.2 33.6 33.8 -189.1
 GLU-230   TYR-231  11.0 10.9 4.1 -19.3 90.8 101.0 -7.3
 TYR-231   TYR-232  13.2 13.6 31.9 -3.9 38.0 19.9 273.8
 TYR-232   ILE-233  16.2 16.0 16.4 -3.0 58.0 68.8 36.8
 ILE-233   ARG-234  17.5 16.8 5.2 3.2 65.4 61.1 2.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-238   LEU-239  13.6 13.8 -10.2 -5.8 82.5 89.8 5.0
 LEU-239   THR-240  10.2 10.4 -8.7 8.8 144.4 140.8 -3.6
 THR-240   PHE-241  8.3 8.6 -5.7 0.7 94.4 94.5 22.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees