D-Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-45   TYR-46  7.8 7.9 3.5 0.6 69.5 67.1 45.7
 TYR-46   ASP-47  9.7 9.9 -9.1 13.3 162.4 162.3 114.7
 ASP-47   SER-48  10.4 10.4 -5.7 -1.0 102.1 103.2 -88.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-50   GLY-51  7.4 7.9 20.2 0.6 23.0 22.1 412.5
 GLY-51   ARG-52  8.1 8.2 -4.8 -3.1 126.2 125.4 -123.5
 ARG-52   PHE-53  6.3 6.6 -12.0 20.6 76.6 78.5 -81.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-128   VAL-129  11.7 11.9 3.1 -7.5 113.0 111.3 70.5
 VAL-129   LYS-130  7.9 8.1 -1.3 0.6 90.9 90.6 8.0
 LYS-130   GLY-131  7.2 7.1 -10.0 9.0 129.8 128.8 -24.6
 GLY-131   ALA-132  6.5 6.3 5.2 -4.8 26.0 24.0 47.8
 ALA-132   ASN-133  6.8 6.9 -19.7 18.8 106.6 102.2 -54.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-145   ASN-146  15.2 15.2 -3.0 2.0 97.5 99.3 24.1
 ASN-146   ALA-147  11.4 11.4 3.0 -2.8 60.1 59.1 9.7
 ALA-147   SER-148  11.4 11.5 -0.5 11.5 51.8 54.4 -94.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-152   CYS-153  4.6 4.8 11.9 -9.4 100.4 97.9 5.0
 CYS-153   LEU-154  3.6 3.8 -4.4 4.4 9.4 11.9 -14.7
 LEU-154   ALA-155  4.4 4.5 4.3 -7.1 119.0 118.4 -19.6
 ALA-155   PRO-156  3.1 3.1 0.7 2.3 85.0 89.6 -24.4
 ALA-155   PRO-156  3.1 3.1 0.7 2.3 85.0 89.6 -24.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-155   PRO-156  3.1 3.1 0.7 2.3 85.0 89.6 -24.4
 ALA-155   PRO-156  3.1 3.1 0.7 2.3 85.0 89.6 -24.4
 PRO-156   LEU-157  1.5 1.4 9.7 -14.2 53.9 54.7 -29.6
 LEU-157   ALA-158  2.6 2.6 -0.9 4.1 164.7 165.6 57.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-211   LYS-212  10.5 10.6 -12.6 15.4 51.4 54.8 -46.2
 LYS-212   ALA-213  12.3 12.2 -19.8 15.2 112.9 114.9 34.5
 ALA-213   VAL-214  11.9 11.8 -1.4 -1.8 79.3 83.9 63.0
 VAL-214   GLY-215  8.4 8.1 1.8 -13.8 139.8 139.2 194.0
 GLY-215   LYS-216  10.1 9.3 3.1 2.5 74.4 77.7 5.5
 LYS-216   VAL-217  12.4 12.1 7.0 -9.2 69.5 63.1 -94.3
 VAL-217   LEU-218  10.2 10.0 9.6 -5.8 133.5 125.6 -60.4
 LEU-218   PRO-219  8.1 7.9 -3.0 6.2 34.3 29.3 -28.5
 PRO-219   GLU-220  10.4 10.2 -4.8 11.1 37.7 37.5 -130.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-236   VAL-237  11.7 12.6 -152.6 157.6 26.2 48.3 146.1
 VAL-237   SER-238  11.1 10.8 -14.3 -0.6 35.2 34.1 179.3
 SER-238   VAL-239  11.8 11.7 2.6 2.5 133.2 134.1 -153.6
 VAL-239   VAL-240  11.5 11.4 5.1 -3.9 153.4 152.4 -58.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-311   ASP-312  6.6 6.5 -3.0 1.8 143.7 145.7 8.1
 ASP-312   THR-313  6.7 6.8 -17.1 3.4 80.8 83.6 40.5
 THR-313   GLU-314  8.0 8.0 11.3 3.1 50.2 39.8 186.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees