Nickel-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-124   ALA-125  11.1 10.4 -0.2 -6.4 104.5 109.5 -10.5
 ALA-125   TYR-126  9.7 8.7 -37.6 62.0 168.9 174.0 102.3
 TYR-126   TYR-127  8.0 7.9 33.7 6.5 77.3 52.8 63.0
 TYR-127   PRO-128  6.7 7.7 -15.4 -24.5 143.7 122.2 -73.5
 PRO-128   PHE-129  5.1 4.8 23.6 -11.6 102.5 119.9 -48.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-242   SER-243  8.1 8.4 -5.1 -9.9 30.2 43.5 31.3
 SER-243   GLN-244  7.5 7.5 0.9 -2.6 87.5 76.9 13.4
 GLN-244   PRO-245  6.9 6.6 -8.4 -1.9 88.1 73.7 14.0
 PRO-245   ILE-246  4.1 3.3 4.0 -5.6 146.4 165.6 1.3
 ILE-246   GLU-247  1.1 1.2 60.6 -78.3 93.6 105.4 2.5
 GLU-247   THR-248  3.4 3.0 19.6 -6.0 45.2 35.0 33.2
 THR-248   VAL-249  6.4 6.1 6.3 -7.9 71.2 74.1 -17.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-469   ILE-470  4.1 4.1 -16.8 -14.7 75.5 72.4 49.2
 ILE-470   SER-471  1.0 1.2 23.7 5.8 66.3 57.2 38.6
 SER-471   MET-472  2.8 2.8 8.7 -1.3 89.7 78.7 -11.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees