Tryparedoxin II

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-26   THR-27  20.7 20.9 -13.1 5.1 18.2 10.8 116.8
 THR-27   ASN-28  22.0 22.1 33.6 -7.8 118.2 107.9 -52.7
 ASN-28   VAL-29  19.7 19.7 -9.0 3.3 129.0 112.6 -29.2
 VAL-29   LEU-30  16.2 15.8 -3.6 -15.1 87.7 96.1 3.0
 LEU-30   LYS-31  14.6 14.2 0.3 5.9 132.9 138.6 -205.3
 LYS-31   GLY-32  13.4 13.2 20.1 -15.0 69.0 72.3 -11.1
 GLY-32   ALA-33  13.8 12.6 -61.4 82.3 128.0 141.7 88.7
 ALA-33   ALA-34  17.3 14.7 -66.4 -59.0 68.6 109.3 -145.5
 ALA-34   ALA-35  18.4 17.3 -110.8 5.9 108.9 57.3 -337.9
 ALA-35   ASP-36  18.8 18.2 140.4 -22.2 127.5 94.4 1760.3
 ASP-36   ILE-37  20.5 18.0 133.2 -57.6 140.5 146.1 -1186.8
 ILE-37   ALA-38  17.6 18.6 41.7 26.8 94.8 84.4 33.4
 ALA-38   LEU-39  19.1 20.2 -6.5 3.1 60.8 74.4 113.0
 LEU-39   PRO-40  17.7 18.1 157.3 -11.6 174.1 171.0 -1976.5
 PRO-40   SER-41  18.4 16.2 175.7 -12.1 107.3 107.4 2014.8
 SER-41   LEU-42  15.6 16.8 -17.3 161.6 87.1 87.1 177.8
 LEU-42   ALA-43  13.2 13.1 19.1 16.9 138.1 144.1 -451.1
 ALA-43   GLY-44  14.8 14.2 -7.4 -18.0 57.1 66.9 154.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-45   THR-46  9.9 9.4 4.3 -11.8 125.0 127.8 86.5
 THR-46   VAL-47  9.3 9.3 1.7 -1.7 145.9 145.2 -93.7
 VAL-47   PHE-48  9.4 9.2 -13.9 17.3 44.9 38.8 -165.4
 PHE-48   PHE-49  8.0 7.7 -17.0 1.7 29.2 29.1 167.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-65   LEU-66  7.3 7.3 11.3 -7.4 126.9 121.0 -61.6
 LEU-66   ILE-67  3.8 3.7 -1.2 -5.8 61.7 65.8 88.8
 ILE-67   ASP-68  4.6 4.4 0.7 -4.3 140.5 144.3 7.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-80   VAL-81  6.2 6.3 10.6 -23.7 148.5 149.3 238.2
 VAL-81   MET-82  5.5 5.6 -1.7 3.0 51.7 50.0 -265.2
 MET-82   LEU-83  8.0 7.9 11.1 -15.8 154.0 157.6 159.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-127   LEU-128  9.1 9.2 -7.3 -3.3 39.4 36.1 115.0
 LEU-128   VAL-129  8.4 8.2 2.0 -18.5 126.6 129.8 270.9
 VAL-129   GLY-130  11.1 10.9 12.8 -17.1 149.4 143.0 -18.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees