Dna-Directed RNA Polymerase Beta' Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-109   SER-110  51.2 48.6 0.1 -145.2 40.1 87.3 231.5
 SER-110   LYS-111  50.3 50.9 -121.2 -22.2 144.8 157.6 -124.4
 LYS-111   ILE-112  53.5 52.9 43.2 -97.4 28.1 46.0 -40.0
 ILE-112   GLY-113  51.6 49.5 105.2 71.0 74.0 116.1 55.5
 GLY-113   THR-114  48.3 46.8 24.8 6.6 93.9 93.2 -55.0
 THR-114   LEU-115  50.4 44.8 97.2 -19.8 27.0 162.4 79.2
 LEU-115   LEU-116  52.5 44.1 148.4 -140.0 39.0 100.5 -5.6
 LEU-116   ASP-117  49.2 41.2 -16.6 178.7 73.1 138.6 -115.1
 ASP-117   LEU-118  46.7 40.9 31.7 -93.8 107.8 80.7 -21.1
 LEU-118   SER-119  43.8 44.3 -87.1 -106.3 36.5 52.6 182.6
 SER-119   ALA-120  41.7 43.0 -30.1 178.2 26.9 112.7 -68.7
 ALA-120   THR-121  44.4 41.0 55.3 52.1 100.7 46.0 -96.3
 THR-121   GLU-122  43.1 43.3 110.3 -125.5 85.8 110.7 20.7
 GLU-122   LEU-123  39.6 46.3 12.3 -29.0 22.3 110.7 -6.2
 LEU-123   GLU-124  40.1 44.3 113.8 59.2 84.2 51.9 140.5
 GLU-124   GLN-125  43.4 43.2 140.4 -114.0 117.0 103.1 -8.6
 GLN-125   VAL-126  42.0 39.5 43.7 -70.8 59.4 68.2 -18.3
 VAL-126   LEU-127  39.2 38.3 -95.6 -88.5 143.8 162.3 -163.3
 LEU-127   TYR-128  41.7 39.8 85.8 76.0 96.8 82.7 67.7
 TYR-128   PHE-129  42.9 42.9 23.9 147.3 120.2 29.3 90.9
 PHE-129   ASN-130  40.9 42.4 82.6 28.4 74.5 64.8 75.7
 ASN-130   LYS-131  37.1 45.0 -95.2 -135.6 157.4 163.6 -214.6
 LYS-131   TYR-132  36.4 44.5 -115.9 -73.2 118.0 124.3 133.2
 TYR-132   ILE-133  36.4 43.3 -30.5 32.7 125.1 104.9 -2.0
 ILE-133   VAL-134  38.5 39.6 60.2 -39.6 82.3 34.7 29.4
 VAL-134   LEU-135  40.7 36.9 -172.9 -106.9 170.7 73.6 -180.1
 LEU-135   ASP-136  40.4 33.7 59.2 -70.8 78.3 137.5 3.9
 ASP-136   PRO-137  44.1 31.3 72.3 -106.6 30.3 90.6 191.4
 PRO-137   LYS-138  45.0 29.0 -166.8 179.2 131.0 88.1 -157.0
 LYS-138   GLY-139  43.2 31.9 -97.5 -133.7 78.5 127.1 146.6
 GLY-139   ALA-140  39.9 35.0 151.2 -78.9 38.4 113.0 32.7
 ALA-140   VAL-141  37.9 37.7 179.0 -94.6 92.1 116.9 36.8
 VAL-141   LEU-142  34.4 40.9 -60.8 84.8 81.5 61.0 -10.7
 LEU-142   ASP-143  31.7 43.7 -72.5 -50.1 52.0 6.6 -211.0
 ASP-143   GLY-144  29.5 42.5 -73.9 -170.0 75.9 72.0 108.6
 GLY-144   VAL-145  27.8 38.7 155.6 47.0 69.1 104.6 85.5
 VAL-145   PRO-146  31.3 38.4 -75.1 -5.4 104.9 100.9 -20.0
 PRO-146   VAL-147  34.3 35.7 -14.1 -31.2 44.6 45.8 14.7
 VAL-147   GLU-148  36.5 33.9 37.5 22.5 142.9 75.0 -17.3
 GLU-148   LYS-149  38.0 34.3 -3.0 -151.4 84.5 142.9 -161.1
 LYS-149   ARG-150  41.5 31.8 81.2 26.5 154.7 40.3 0.9
 ARG-150   GLN-151  43.2 32.3 -108.6 87.7 44.9 126.5 21.6
 GLN-151   LEU-152  39.9 35.5 142.0 -6.6 94.9 60.1 40.8
 LEU-152   LEU-153  37.3 34.1 163.6 106.0 52.0 49.2 -54.0
 LEU-153   THR-154  34.7 31.0 140.1 -10.2 120.1 29.6 103.4
 THR-154   ASP-155  32.3 32.9 -159.3 -24.4 109.5 110.4 -84.4
 GLU-156   GLU-157  29.5 29.5 129.1 -73.9 41.9 82.5 21.6
 GLU-157   TYR-158  30.3 31.0 -149.8 -57.7 130.4 138.9 159.7
 TYR-158   ARG-159  33.4 31.9 -148.8 -121.8 129.9 69.8 24.4
 ARG-159   GLU-160  31.6 32.5 -158.0 -58.1 133.0 149.9 -158.2
 GLU-160   LEU-161  28.8 32.9 42.5 88.3 54.3 95.2 27.1
 LEU-161   ARG-162  31.6 31.9 -164.4 -1.3 129.5 151.6 193.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-440   ARG-441  26.6 30.6 -27.2 175.5 83.1 87.0 118.1
 ARG-441   ASN-442  23.3 31.3 177.2 147.4 141.3 65.3 13.6
 ASN-442   VAL-443  24.3 28.9 -140.9 -142.8 103.5 95.0 95.8
 VAL-443   VAL-444  24.1 29.5 -91.2 36.7 109.3 112.5 24.9
 VAL-444   ARG-445  26.7 26.5 43.6 -14.0 44.3 62.6 37.6
 ARG-445   VAL-446  25.8 25.4 -80.6 76.6 117.0 153.3 2.7
 VAL-446   VAL-447  27.6 24.8 58.7 -52.4 22.9 70.0 9.0
 VAL-447   GLU-448  27.4 23.3 164.2 139.7 70.8 16.1 -57.4
 GLU-448   SER-449  27.6 23.3 103.3 -40.3 45.5 52.6 34.0
 SER-449   TYR-450  31.1 22.6 -12.4 -16.3 70.3 153.3 -14.6
 TYR-450   ASP-451  34.0 25.0 64.5 19.2 67.4 42.9 -143.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees