Ribonuclease HII

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-6   ASP-7  7.1 7.2 -2.2 4.7 148.8 151.8 49.0
 ASP-7   GLU-8  5.4 5.5 -3.8 4.6 78.8 79.7 12.5
 GLU-8   ALA-9  6.7 6.7 -2.6 4.4 118.4 118.4 22.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-20   GLY-21  8.6 8.6 -3.5 7.6 134.8 132.9 52.6
 GLY-21   VAL-22  5.4 5.3 2.5 -5.0 86.3 82.0 8.6
 VAL-22   ALA-23  5.7 5.6 -1.2 -0.3 121.9 121.9 -6.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-62   TYR-63  5.1 4.8 -6.0 12.4 150.1 152.6 119.3
 TYR-63   TYR-64  3.8 3.3 -5.3 -0.4 81.4 81.0 63.4
 TYR-64   VAL-65  6.1 5.8 -0.2 -5.7 136.7 140.9 -108.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-87   PHE-88  14.9 15.3 5.9 -5.7 76.8 76.5 47.5
 PHE-88   VAL-89  12.7 13.0 4.6 -2.9 45.2 42.7 36.1
 VAL-89   VAL-90  15.7 15.9 -1.2 4.8 155.2 150.7 54.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-144   SER-145  2.1 2.2 2.8 -1.7 52.9 54.0 38.7
 SER-145   ILE-146  0.5 0.5 0.2 -0.8 113.4 112.4 -19.0
 ILE-146   ILE-147  3.2 3.2 1.1 -1.1 132.9 135.0 37.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees