Nuclear Factor Nf-Kappa-B P105 Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-303   HIS-304  9.7 9.5 13.2 35.0 136.8 114.5 -13.8
 HIS-304   ARG-305  7.1 6.7 -43.1 129.3 84.1 40.0 -28.2
 ARG-305   GLN-306  3.7 5.4 -103.5 -130.1 106.0 82.8 9.3
 GLN-306   PHE-307  2.7 6.1 -174.4 -24.8 96.9 123.9 28.4
 PHE-307   ALA-308  4.0 4.0 -151.2 -24.4 170.5 174.7 100.3
 ALA-308   ILE-309  4.6 4.8 29.3 -14.0 79.9 81.9 2.3

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees