Protease Do

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  VAL-260   LYS-261  4.6 5.2 -10.6 -1.3 115.5 115.6 -11.7  LYS-261   ARG-262  1.6 1.5 44.2 50.4 5.1 7.8 98.0  ARG-262   GLY-263  1.4 1.3 15.6 -11.8 76.8 75.5 -1.1  GLY-263   GLU-264  2.6 2.1 -116.3 70.1 143.9 141.5 -39.5  GLU-264   LEU-265  5.1 3.0 -53.1 -59.3 116.8 90.6 -33.2  LEU-265   GLY-266  7.0 6.1 90.5 -132.5 93.9 29.3 -37.4  GLY-266   ILE-267  9.8 7.8 -95.7 -86.8 142.5 84.2 126.8 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees